PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27451-27500 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l150_m1_e0 | het | 91.0230 | 98.0117 | 84.9647 | 93.0437 | 838 | 17 | 842 | 149 | 6 | 4.0269 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | het | 91.3052 | 98.1236 | 85.3728 | 93.4833 | 889 | 17 | 893 | 153 | 6 | 3.9216 | |
| jlack-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8161 | 99.8396 | 99.7926 | 59.1577 | 10581 | 17 | 10588 | 22 | 21 | 95.4545 | |
| hfeng-pmm1 | INDEL | * | map_siren | hetalt | 96.4361 | 93.1174 | 100.0000 | 87.5803 | 230 | 17 | 232 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0973 | 98.3085 | 99.8990 | 63.5493 | 988 | 17 | 989 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4967 | 94.8485 | 96.1538 | 71.6106 | 313 | 17 | 300 | 12 | 8 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.9799 | 94.9254 | 99.1254 | 69.6996 | 318 | 17 | 340 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2643 | 91.7476 | 96.9231 | 87.6033 | 189 | 17 | 189 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.3421 | 93.0894 | 97.7064 | 87.3182 | 229 | 17 | 213 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.8736 | 99.8514 | 52.0252 | 13431 | 17 | 13435 | 20 | 17 | 85.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | * | 94.4262 | 94.4262 | 94.4262 | 85.4137 | 288 | 17 | 288 | 17 | 4 | 23.5294 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7791 | 99.8466 | 99.7116 | 58.4535 | 11067 | 17 | 11063 | 32 | 3 | 9.3750 | |
| jlack-gatk | SNP | * | segdup | homalt | 99.8743 | 99.8418 | 99.9069 | 88.3916 | 10726 | 17 | 10726 | 10 | 10 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5569 | 99.7479 | 97.3939 | 48.1612 | 6727 | 17 | 6727 | 180 | 3 | 1.6667 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | het | 98.1285 | 98.0117 | 98.2456 | 88.8001 | 838 | 17 | 840 | 15 | 4 | 26.6667 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7097 | 99.5308 | 99.8892 | 74.1552 | 3606 | 17 | 3606 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.5925 | 98.0163 | 99.1755 | 86.0408 | 840 | 17 | 842 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.8610 | 96.5795 | 99.1770 | 86.8328 | 480 | 17 | 482 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.6137 | 98.0460 | 99.1879 | 86.1881 | 853 | 17 | 855 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.9079 | 96.6535 | 99.1952 | 86.9004 | 491 | 17 | 493 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1378 | 93.1174 | 97.2477 | 79.5880 | 230 | 17 | 212 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9438 | 90.8602 | 99.4118 | 70.1230 | 169 | 17 | 169 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.8396 | 83.1683 | 97.6744 | 93.4799 | 84 | 17 | 84 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6547 | 99.6215 | 99.6881 | 70.0040 | 4474 | 17 | 4474 | 14 | 5 | 35.7143 | |
| hfeng-pmm1 | SNP | tv | segdup | het | 99.6406 | 99.6785 | 99.6028 | 90.6534 | 5270 | 17 | 5266 | 21 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | homalt | 40.5797 | 29.1667 | 66.6667 | 85.0000 | 7 | 17 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.2961 | 66.6667 | 30.9735 | 85.3532 | 34 | 17 | 70 | 156 | 39 | 25.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 94.7873 | 91.4141 | 98.4190 | 82.4913 | 181 | 17 | 249 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 94.8894 | 91.5423 | 98.4906 | 83.3960 | 184 | 17 | 261 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | het | 92.0218 | 96.8401 | 87.6603 | 96.3583 | 521 | 17 | 547 | 77 | 64 | 83.1169 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 34.3511 | 83.3333 | 21.6346 | 92.3048 | 85 | 17 | 90 | 326 | 5 | 1.5337 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5864 | 98.0186 | 99.1607 | 45.3115 | 841 | 17 | 827 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5839 | 97.8372 | 99.3421 | 60.4167 | 769 | 17 | 755 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 77.2179 | 65.3061 | 94.4444 | 25.0000 | 32 | 17 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | het | 94.2433 | 95.0725 | 93.4286 | 84.6491 | 328 | 17 | 327 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.0251 | 48.4848 | 53.8462 | 69.0476 | 16 | 17 | 7 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 81.7391 | 73.4375 | 92.1569 | 88.6414 | 47 | 17 | 47 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 82.0513 | 73.8462 | 92.3077 | 88.7931 | 48 | 17 | 48 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 81.4371 | 80.0000 | 82.9268 | 93.5433 | 68 | 17 | 68 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 5.5556 | 0.0000 | 0.0000 | 1 | 17 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 92.4308 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |