PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27051-27100 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7071 | 66.0377 | 76.0870 | 92.4959 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7071 | 66.0377 | 76.0870 | 92.6518 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | homalt | 89.8311 | 99.8331 | 81.6508 | 42.6198 | 10764 | 18 | 10773 | 2421 | 2004 | 82.7757 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8700 | 99.7128 | 98.0414 | 48.3490 | 6250 | 18 | 6257 | 125 | 13 | 10.4000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6820 | 99.5032 | 99.8615 | 74.2124 | 3605 | 18 | 3605 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8937 | 99.8407 | 99.9468 | 55.7785 | 11278 | 18 | 11278 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | * | 97.1639 | 96.4981 | 97.8389 | 90.4125 | 496 | 18 | 498 | 11 | 4 | 36.3636 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 74.6404 | 61.7021 | 94.4444 | 94.7674 | 29 | 18 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 81.6667 | 73.1343 | 92.4528 | 88.7712 | 49 | 18 | 49 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | het | 92.9242 | 94.4785 | 91.4201 | 83.9430 | 308 | 18 | 309 | 29 | 4 | 13.7931 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | het | 93.6777 | 93.9799 | 93.3775 | 88.3891 | 281 | 18 | 282 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | het | 93.8813 | 94.1748 | 93.5897 | 89.6242 | 291 | 18 | 292 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | homalt | 64.0000 | 47.0588 | 100.0000 | 97.5309 | 16 | 18 | 16 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9153 | 92.5620 | 97.3913 | 85.7232 | 224 | 18 | 224 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.8333 | 46 | 18 | 46 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 82.0611 | 47 | 18 | 47 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.4085 | 98.5294 | 87.0036 | 79.8311 | 1206 | 18 | 1205 | 180 | 12 | 6.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5028 | 99.3917 | 79.7641 | 72.5419 | 2941 | 18 | 2976 | 755 | 16 | 2.1192 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | hetalt | 34.1880 | 21.7391 | 80.0000 | 99.4253 | 5 | 18 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.2500 | 68.4211 | 100.0000 | 96.5570 | 39 | 18 | 45 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.7807 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.8545 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 10.0000 | 5.2632 | 100.0000 | 98.9583 | 1 | 18 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 18.1818 | 10.0000 | 100.0000 | 98.5507 | 2 | 18 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 55.0000 | 37.9310 | 100.0000 | 94.3089 | 11 | 18 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | homalt | 94.7029 | 91.1765 | 98.5130 | 83.5474 | 186 | 18 | 265 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0335 | 94.7826 | 99.3939 | 76.8908 | 327 | 18 | 328 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2737 | 93.7716 | 98.9130 | 83.8123 | 271 | 18 | 273 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1786 | 98.9124 | 99.4462 | 49.9692 | 1637 | 18 | 1616 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | * | 97.4111 | 96.4637 | 98.3773 | 78.8139 | 491 | 18 | 485 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | homalt | 95.2945 | 94.1748 | 96.4413 | 53.1667 | 291 | 18 | 271 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | het | 69.4745 | 61.7021 | 79.4872 | 79.6875 | 29 | 18 | 31 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2072 | 98.6486 | 99.7720 | 62.8458 | 1314 | 18 | 1313 | 3 | 0 | 0.0000 | |