PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26751-26800 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.1762 | 96.3320 | 98.0354 | 75.0368 | 499 | 19 | 499 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6036 | 99.2382 | 90.3825 | 74.1987 | 2475 | 19 | 2481 | 264 | 1 | 0.3788 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8165 | 99.8119 | 95.8994 | 55.8743 | 10083 | 19 | 10103 | 432 | 262 | 60.6481 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.3836 | 87.5000 | 39.4521 | 89.5744 | 133 | 19 | 144 | 221 | 4 | 1.8100 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 55.9506 | 88.4848 | 40.9091 | 87.7738 | 146 | 19 | 153 | 221 | 13 | 5.8824 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2500 | 73.2394 | 91.2281 | 63.4615 | 52 | 19 | 52 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | het | 36.6885 | 59.5745 | 26.5060 | 84.0077 | 28 | 19 | 22 | 61 | 60 | 98.3607 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3792 | 97.5547 | 99.2177 | 83.0610 | 758 | 19 | 761 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0002 | 95.9052 | 96.0954 | 70.9880 | 445 | 19 | 443 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.2862 | 87.4172 | 100.0000 | 47.6744 | 132 | 19 | 135 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8762 | 99.8119 | 99.9405 | 50.3909 | 10083 | 19 | 10083 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1974 | 97.7984 | 98.5998 | 82.9317 | 844 | 19 | 845 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1898 | 98.3926 | 100.0000 | 27.0507 | 1163 | 19 | 1165 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | * | 97.5124 | 96.2672 | 98.7903 | 81.9898 | 490 | 19 | 490 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9473 | 95.6422 | 98.2885 | 83.2788 | 417 | 19 | 402 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9038 | 92.2764 | 97.6852 | 86.6419 | 227 | 19 | 211 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9005 | 93.9873 | 100.0000 | 71.9133 | 297 | 19 | 298 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9443 | 98.1905 | 99.7099 | 59.8758 | 1031 | 19 | 1031 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.0672 | 97.7108 | 98.4262 | 83.5622 | 811 | 19 | 813 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | * | 98.1282 | 97.7830 | 98.4760 | 85.0298 | 838 | 19 | 840 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | * | 98.1563 | 97.8161 | 98.4988 | 85.2244 | 851 | 19 | 853 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.5294 | 89.3258 | 98.1481 | 70.3839 | 159 | 19 | 159 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | * | 95.8124 | 93.7705 | 97.9452 | 80.9150 | 286 | 19 | 286 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7865 | 99.6758 | 99.8974 | 63.2172 | 5841 | 19 | 5841 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9015 | 84.6774 | 98.1132 | 99.9441 | 105 | 19 | 104 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.7083 | 96.1066 | 99.3644 | 68.5333 | 469 | 19 | 469 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8899 | 98.2537 | 99.5345 | 61.1292 | 1069 | 19 | 1069 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 84.4720 | 78.1609 | 91.8919 | 88.8218 | 68 | 19 | 68 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.2174 | 82.1782 | 100.0000 | 93.4543 | 83 | 18 | 83 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 46.2291 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8777 | 97.8947 | 99.8807 | 46.8948 | 837 | 18 | 837 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.7335 | 99.5646 | 99.9029 | 70.1838 | 4116 | 18 | 4116 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | segdup | het | 99.3773 | 99.6595 | 99.0966 | 91.7904 | 5269 | 18 | 5265 | 48 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3133 | 95.5112 | 99.1848 | 77.7374 | 383 | 18 | 365 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8601 | 97.5207 | 98.2019 | 84.3405 | 708 | 18 | 710 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9668 | 97.6440 | 98.2917 | 85.0197 | 746 | 18 | 748 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9827 | 97.6623 | 98.3051 | 85.1328 | 752 | 18 | 754 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.5545 | 91.3876 | 97.9487 | 73.9305 | 191 | 18 | 191 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3616 | 98.9595 | 99.7670 | 33.2686 | 1712 | 18 | 1713 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.6731 | 91.7051 | 100.0000 | 37.4251 | 199 | 18 | 209 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 97.1634 | 96.6102 | 97.7230 | 88.7825 | 513 | 18 | 515 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | * | homalt | 97.3324 | 99.7115 | 95.0642 | 52.3622 | 6221 | 18 | 6221 | 323 | 318 | 98.4520 | |