PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 531 532 533 534 535 536 537 538 539 ... 1720 1721 » 26701-26750 / 86044 show all
ciseli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.8551	98.9247	82.3088	71.2571	1748	19	1754	377	114	30.2387
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9677	98.5714	95.4152	84.7413	1311	19	1103	53	36	67.9245
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.5874	94.5714	98.6911	35.4730	331	19	377	5	5	100.0000
ckim-dragen	INDEL	D1_5	HG002complexvar	homalt	99.7544	99.8207	99.6881	60.4958	10579	19	10549	33	30	90.9091
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5338	99.7378	97.3585	36.6570	7228	19	7224	196	195	99.4898
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7691	99.7171	99.8211	53.8271	6697	19	6696	12	7	58.3333
ckim-dragen	INDEL	D1_5	map_l125_m1_e0	het	96.3840	97.3829	95.4054	88.2297	707	19	706	34	3	8.8235
ckim-dragen	INDEL	D1_5	map_l125_m2_e0	het	96.3746	97.5131	95.2625	88.9141	745	19	744	37	3	8.1081
ckim-dragen	INDEL	D1_5	map_l125_m2_e1	het	96.4026	97.5325	95.2986	89.0022	751	19	750	37	3	8.1081
ckim-dragen	INDEL	D1_5	map_l150_m1_e0	*	96.9396	97.3501	96.5326	89.6646	698	19	696	25	3	12.0000
ckim-dragen	INDEL	D1_5	map_l150_m2_e0	*	96.9967	97.5098	96.4889	90.2658	744	19	742	27	3	11.1111
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	27.8052	1163	19	1165	6	6	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3235	99.1976	99.4496	87.1665	2349	19	2349	13	13	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6905	99.8338	99.5476	42.3216	11414	19	11441	52	4	7.6923
ckim-dragen	SNP	ti	map_l250_m1_e0	homalt	99.1261	98.8177	99.4364	82.0944	1588	19	1588	9	8	88.8889
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.3404	78.1609	67.3267	99.9209	68	19	68	33	18	54.5455
ghariani-varprowl	INDEL	*	map_l150_m1_e0	het	89.9408	97.7778	83.2669	93.2001	836	19	836	168	48	28.5714
ghariani-varprowl	INDEL	D1_5	map_l150_m2_e1	homalt	94.8240	92.3387	97.4468	85.7230	229	19	229	6	1	16.6667
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	69.5652	66.6667	72.7273	99.4295	38	19	40	15	9	60.0000
ghariani-varprowl	INDEL	D6_15	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	16.0000	9.5238	50.0000	99.9920	2	19	1	1	1	100.0000
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapfb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapfb	INDEL	D16_PLUS	map_l100_m0_e0	het		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	69.8354	74.6667	65.5914	51.8135	56	19	61	32	10	31.2500
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	57.9710	51.2821	66.6667	62.5000	20	19	4	2	2	100.0000
gduggal-snapfb	INDEL	D6_15	map_siren	homalt	89.5161	85.3846	94.0678	84.8912	111	19	111	7	6	85.7143
gduggal-snapfb	INDEL	I16_PLUS	segdup	homalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	73.8072	96.5392	59.7403	70.7317	530	19	552	372	31	8.3333
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	83.9467	95.9574	74.6082	62.8854	451	19	476	162	26	16.0494
gduggal-snapfb	INDEL	I6_15	HG002compoundhet	homalt	3.2572	38.7097	1.7002	37.4879	12	19	11	636	636	100.0000
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	map_l100_m0_e0	het		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapplat	INDEL	D6_15	map_l125_m0_e0	het	46.5116	34.4828	71.4286	97.4638	10	19	5	2	0	0.0000
gduggal-snapplat	INDEL	I16_PLUS	segdup	homalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-snapplat	INDEL	I1_5	map_l250_m1_e0	het	72.5664	68.3333	77.3585	98.6126	41	19	41	12	0	0.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	51.2821	0.0000	0.0000	20	19	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	42.4242	0.0000	0.0000	14	19	0	0	0
gduggal-snapvard	INDEL	D6_15	map_l125_m1_e0	homalt	59.4059	44.1176	90.9091	79.0476	15	19	20	2	2	100.0000
gduggal-snapvard	INDEL	I16_PLUS	segdup	homalt		0.0000		100.0000	0	19	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l125_m1_e0	*	59.6747	64.1509	55.7823	82.2678	34	19	82	65	50	76.9231
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e0	*	60.0321	64.1509	56.4103	82.6087	34	19	88	68	53	77.9412
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e1	*	60.1890	64.1509	56.6879	82.9162	34	19	89	68	53	77.9412
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	33.5766	54.7619	24.2105	97.0652	23	19	23	72	1	1.3889
gduggal-snapvard	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	55.5669	45.7143	70.8333	96.2848	16	19	17	7	2	28.5714
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	72.1995	97.7700	57.2314	91.8059	833	19	831	621	50	8.0515
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.4469	99.5112	99.3827	62.5253	3868	19	3864	24	9	37.5000
ghariani-varprowl	INDEL	D6_15	map_l125_m1_e0	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
ghariani-varprowl	INDEL	D6_15	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	34.4828	20.8333	100.0000	91.2281	5	19	5	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge