PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26601-26650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | homalt | 99.8628 | 99.8280 | 99.8977 | 68.2342 | 11026 | 19 | 10743 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | homalt | 99.8667 | 99.8327 | 99.9006 | 70.5235 | 11339 | 19 | 11058 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | homalt | 99.8678 | 99.8342 | 99.9015 | 70.5782 | 11439 | 19 | 11154 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.9665 | 98.0847 | 81.3995 | 77.6081 | 973 | 19 | 919 | 210 | 7 | 3.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.2616 | 85.6061 | 93.2432 | 87.4150 | 113 | 19 | 69 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 64.1509 | 47.2222 | 100.0000 | 59.5238 | 17 | 19 | 17 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | * | 78.7330 | 75.0000 | 82.8571 | 54.8387 | 57 | 19 | 58 | 12 | 2 | 16.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | het | 73.9726 | 58.6957 | 100.0000 | 97.7500 | 27 | 19 | 27 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | het | 74.6667 | 59.5745 | 100.0000 | 97.7162 | 28 | 19 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | segdup | het | 87.4251 | 79.3478 | 97.3333 | 97.4507 | 73 | 19 | 73 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 34.2857 | 24.0000 | 60.0000 | 90.6542 | 6 | 19 | 6 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | * | 74.6667 | 59.5745 | 100.0000 | 95.0427 | 28 | 19 | 29 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 71.4286 | 56.8182 | 96.1538 | 82.0690 | 25 | 19 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 29.6296 | 88.8889 | 99.4278 | 8 | 19 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_siren | hetalt | 79.1667 | 66.6667 | 97.4359 | 82.5893 | 38 | 19 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | func_cds | homalt | 99.4394 | 98.8850 | 100.0000 | 27.0563 | 1685 | 19 | 1685 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.5025 | 96.2525 | 98.7854 | 87.2812 | 488 | 19 | 488 | 6 | 5 | 83.3333 | |
| gduggal-bwaplat | INDEL | * | func_cds | homalt | 95.3917 | 91.5929 | 99.5192 | 34.3849 | 207 | 19 | 207 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | hetalt | 71.6418 | 55.8140 | 100.0000 | 97.4737 | 24 | 19 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | homalt | 38.7097 | 24.0000 | 100.0000 | 99.3555 | 6 | 19 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 74.3590 | 60.4167 | 96.6667 | 96.4200 | 29 | 19 | 29 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9504 | 99.5147 | 90.7864 | 82.3867 | 3896 | 19 | 3902 | 396 | 320 | 80.8081 | |
| ltrigg-rtg2 | SNP | ti | func_cds | * | 99.7392 | 99.8622 | 99.6165 | 20.8703 | 13768 | 19 | 13767 | 53 | 1 | 1.8868 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3212 | 98.9623 | 95.7336 | 62.0458 | 1812 | 19 | 1840 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7486 | 99.5235 | 99.9748 | 31.2218 | 3968 | 19 | 3962 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5540 | 97.9189 | 99.1972 | 85.2279 | 894 | 19 | 865 | 7 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.2733 | 88.9535 | 89.5954 | 83.6638 | 153 | 19 | 155 | 18 | 4 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 52.3810 | 36.6667 | 91.6667 | 78.9474 | 11 | 19 | 11 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | het | 96.9382 | 96.7632 | 97.1138 | 88.6556 | 568 | 19 | 572 | 17 | 2 | 11.7647 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.6138 | 97.3501 | 83.0166 | 59.0666 | 698 | 19 | 699 | 143 | 81 | 56.6434 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.6748 | 72.0588 | 89.0909 | 96.9846 | 49 | 19 | 49 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.3362 | 74.6667 | 78.0822 | 54.3750 | 56 | 19 | 57 | 16 | 14 | 87.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8276 | 97.3501 | 98.3099 | 87.6436 | 698 | 19 | 698 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 97.9592 | 97.5098 | 98.4127 | 88.2536 | 744 | 19 | 744 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.0843 | 97.2973 | 87.4016 | 37.3944 | 684 | 19 | 777 | 112 | 107 | 95.5357 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |