PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 94.0594 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.8099 | 93.9210 | 22.8907 | 61.1792 | 309 | 20 | 312 | 1051 | 920 | 87.5357 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.3333 | 25.9259 | 66.6667 | 97.2727 | 7 | 20 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | func_cds | * | 99.6201 | 99.8549 | 99.3864 | 28.0976 | 13767 | 20 | 13767 | 85 | 9 | 10.5882 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.0924 | 99.2138 | 91.2996 | 66.9963 | 2524 | 20 | 2529 | 241 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 45.9459 | 0.0000 | 0.0000 | 17 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | het | 71.7253 | 78.2609 | 66.1972 | 93.2445 | 72 | 20 | 94 | 48 | 37 | 77.0833 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9978 | 81.8182 | 82.1782 | 94.8258 | 90 | 20 | 83 | 18 | 6 | 33.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | homalt | 95.1351 | 92.9577 | 97.4170 | 87.2290 | 264 | 20 | 264 | 7 | 3 | 42.8571 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | het | 90.1781 | 97.7925 | 83.6638 | 93.5954 | 886 | 20 | 886 | 173 | 49 | 28.3237 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 66.8212 | 95.0125 | 51.5313 | 71.7775 | 381 | 20 | 387 | 364 | 344 | 94.5055 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 9.0909 | 4.7619 | 100.0000 | 83.3333 | 1 | 20 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7837 | 99.6676 | 99.9000 | 65.8746 | 5997 | 20 | 5997 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6707 | 99.9010 | 65.8803 | 6054 | 20 | 6054 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | segdup | * | 99.5671 | 99.7656 | 99.3693 | 91.0002 | 8512 | 20 | 8508 | 54 | 6 | 11.1111 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4127 | 97.2715 | 99.5810 | 71.6772 | 713 | 20 | 713 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4263 | 99.4533 | 99.3994 | 51.5732 | 3638 | 20 | 3641 | 22 | 17 | 77.2727 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 97.7583 | 97.2106 | 98.3122 | 87.0161 | 697 | 20 | 699 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8940 | 97.3788 | 98.4148 | 87.6287 | 743 | 20 | 745 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6957 | 91.9028 | 97.6636 | 79.0402 | 227 | 20 | 209 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | het | 99.0134 | 99.1217 | 98.9054 | 80.0820 | 2257 | 20 | 2259 | 25 | 7 | 28.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 79.5918 | 66.1017 | 100.0000 | 69.0476 | 39 | 20 | 39 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0748 | 89.3617 | 97.1098 | 66.2109 | 168 | 20 | 168 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9243 | 99.8836 | 99.9650 | 55.5651 | 17157 | 20 | 17153 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 96.2305 | 96.0474 | 96.4143 | 88.2381 | 486 | 20 | 484 | 18 | 3 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9036 | 0.0000 | 0.0000 | 63 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||