PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26251-26300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2519 | 99.0946 | 89.8604 | 65.5446 | 2189 | 20 | 2189 | 247 | 241 | 97.5709 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4911 | 99.7899 | 95.2959 | 55.3475 | 9501 | 20 | 9501 | 469 | 465 | 99.1471 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0827 | 98.9005 | 93.4211 | 85.4634 | 1799 | 20 | 1562 | 110 | 76 | 69.0909 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.0827 | 98.9005 | 93.4211 | 85.4634 | 1799 | 20 | 1562 | 110 | 76 | 69.0909 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.6062 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 66.1849 | 94.2197 | 51.0078 | 73.0013 | 326 | 20 | 329 | 316 | 307 | 97.1519 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9096 | 99.0913 | 98.7286 | 42.0919 | 2181 | 20 | 2252 | 29 | 10 | 34.4828 | |
| anovak-vg | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 35.4839 | 0.0000 | 0.0000 | 11 | 20 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.7533 | 97.8118 | 97.6948 | 70.8013 | 894 | 20 | 890 | 21 | 8 | 38.0952 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1397 | 99.2867 | 95.0836 | 54.6384 | 2784 | 20 | 2785 | 144 | 133 | 92.3611 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8989 | 84.9624 | 97.7273 | 86.2069 | 113 | 20 | 129 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.3929 | 89.2473 | 97.9424 | 67.1177 | 166 | 20 | 238 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.1816 | 92.7536 | 84.0391 | 90.9546 | 256 | 20 | 258 | 49 | 3 | 6.1225 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.9624 | 97.8970 | 88.5014 | 84.9075 | 931 | 20 | 939 | 122 | 1 | 0.8197 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9781 | 96.7532 | 97.2039 | 68.0840 | 596 | 20 | 591 | 17 | 15 | 88.2353 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8892 | 97.3753 | 98.4085 | 66.7402 | 742 | 20 | 742 | 12 | 7 | 58.3333 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8994 | 99.2682 | 96.5678 | 63.0857 | 2713 | 20 | 2701 | 96 | 92 | 95.8333 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7390 | 98.7601 | 98.7179 | 73.4197 | 1593 | 20 | 1540 | 20 | 15 | 75.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3957 | 96.3168 | 98.4991 | 85.7449 | 523 | 20 | 525 | 8 | 3 | 37.5000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2303 | 93.8650 | 98.7179 | 87.5050 | 306 | 20 | 308 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | * | 95.6376 | 93.4426 | 97.9381 | 85.2956 | 285 | 20 | 285 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | het | 94.3674 | 95.8506 | 92.9293 | 85.6812 | 462 | 20 | 460 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | het | 94.6145 | 96.1686 | 93.1099 | 86.6848 | 502 | 20 | 500 | 37 | 5 | 13.5135 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | * | 80.5600 | 72.6027 | 90.4762 | 87.9771 | 53 | 20 | 57 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.6060 | 94.2197 | 55.1887 | 74.6108 | 326 | 20 | 351 | 285 | 24 | 8.4211 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 1.3346 | 25.9259 | 0.6849 | 58.5227 | 7 | 20 | 1 | 145 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | het | 93.6061 | 96.2825 | 91.0744 | 94.8537 | 518 | 20 | 551 | 54 | 10 | 18.5185 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 21.2389 | 13.0435 | 57.1429 | 46.1538 | 3 | 20 | 4 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | het | 74.1935 | 69.6970 | 79.3103 | 98.6878 | 46 | 20 | 46 | 12 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | het | 74.1935 | 69.6970 | 79.3103 | 98.7342 | 46 | 20 | 46 | 12 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | func_cds | het | 25.0000 | 16.6667 | 50.0000 | 50.0000 | 4 | 20 | 4 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 20 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | tech_badpromoters | homalt | 56.5217 | 39.3939 | 100.0000 | 51.7241 | 13 | 20 | 14 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.6725 | 99.5667 | 88.4372 | 45.0706 | 4596 | 20 | 4612 | 603 | 12 | 1.9901 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 19.1559 | 90.9502 | 10.7054 | 81.4012 | 201 | 20 | 214 | 1785 | 28 | 1.5686 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3876 | 99.6809 | 99.0961 | 47.6724 | 6248 | 20 | 6249 | 57 | 11 | 19.2982 | |
| gduggal-snapfb | SNP | ti | segdup | homalt | 99.6936 | 99.7335 | 99.6538 | 89.7294 | 7485 | 20 | 7484 | 26 | 9 | 34.6154 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||