PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25701-25750 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.5237 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7114 | 85.5263 | 92.1429 | 90.3448 | 130 | 22 | 129 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9059 | 99.0898 | 98.7227 | 77.8437 | 2395 | 22 | 2396 | 31 | 26 | 83.8710 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5063 | 86.6667 | 94.7020 | 88.3308 | 143 | 22 | 143 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3257 | 95.6607 | 97.0000 | 82.2127 | 485 | 22 | 485 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.6482 | 99.4280 | 99.8694 | 61.5639 | 3824 | 22 | 3824 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6977 | 98.9130 | 94.5794 | 80.5719 | 2002 | 22 | 2024 | 116 | 6 | 5.1724 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.6640 | 97.7823 | 93.6355 | 79.8288 | 970 | 22 | 971 | 66 | 9 | 13.6364 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7317 | 99.7821 | 99.6812 | 62.4851 | 10075 | 22 | 10007 | 32 | 21 | 65.6250 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3614 | 99.3623 | 99.3605 | 44.2283 | 3428 | 22 | 3418 | 22 | 3 | 13.6364 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6710 | 96.6154 | 98.7500 | 34.0206 | 628 | 22 | 632 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4163 | 99.3280 | 99.5048 | 58.5822 | 3252 | 22 | 3215 | 16 | 13 | 81.2500 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.6188 | 83.4586 | 99.1228 | 73.6111 | 111 | 22 | 113 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.2343 | 95.5734 | 98.9540 | 80.5770 | 475 | 22 | 473 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.1976 | 95.6693 | 98.7755 | 80.7617 | 486 | 22 | 484 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6920 | 97.4178 | 100.0000 | 77.5262 | 830 | 22 | 794 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.6796 | 98.9777 | 98.3834 | 43.8974 | 2130 | 22 | 2130 | 35 | 21 | 60.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5691 | 68.1159 | 95.6522 | 67.8322 | 47 | 22 | 44 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.4626 | 97.6139 | 97.3118 | 72.5745 | 900 | 22 | 905 | 25 | 15 | 60.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1422 | 93.3333 | 73.3475 | 65.0261 | 308 | 22 | 344 | 125 | 113 | 90.4000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 73.0061 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 74.2690 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | hetalt | 71.0526 | 55.1020 | 100.0000 | 90.5303 | 27 | 22 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.9265 | 61.4035 | 76.0000 | 99.4084 | 35 | 22 | 38 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | * | 39.8551 | 31.2500 | 55.0000 | 90.0498 | 10 | 22 | 11 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.3537 | 73.8095 | 98.4127 | 62.2754 | 62 | 22 | 62 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.4878 | 95.3191 | 93.6709 | 57.5649 | 448 | 22 | 444 | 30 | 29 | 96.6667 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6109 | 99.4340 | 97.8014 | 61.3838 | 3865 | 22 | 3870 | 87 | 83 | 95.4023 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4596 | 95.0450 | 100.0000 | 78.5906 | 422 | 22 | 398 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | homalt | 99.5276 | 99.2032 | 99.8541 | 71.1520 | 2739 | 22 | 2738 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8215 | 86.6667 | 95.3947 | 86.7596 | 143 | 22 | 145 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7778 | 99.6246 | 99.9315 | 63.2977 | 5838 | 22 | 5839 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7836 | 99.6344 | 99.9333 | 66.1132 | 5995 | 22 | 5996 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9578 | 97.5323 | 98.3871 | 83.8380 | 830 | 21 | 793 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3741 | 98.7559 | 100.0000 | 56.8481 | 1667 | 21 | 1673 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.4196 | 95.2703 | 93.5841 | 72.6227 | 423 | 21 | 423 | 29 | 20 | 68.9655 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.4089 | 97.4545 | 82.5903 | 53.4716 | 804 | 21 | 1760 | 371 | 336 | 90.5660 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.4089 | 97.4545 | 82.5903 | 53.4716 | 804 | 21 | 1760 | 371 | 336 | 90.5660 | |
| qzeng-custom | SNP | * | func_cds | het | 99.6863 | 99.8118 | 99.5610 | 32.9992 | 11140 | 21 | 11112 | 49 | 1 | 2.0408 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.3380 | 98.3399 | 94.4159 | 89.8856 | 1244 | 21 | 1285 | 76 | 19 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4822 | 99.9317 | 99.0367 | 73.5845 | 30740 | 21 | 30740 | 299 | 294 | 98.3278 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.2766 | 96.5517 | 84.7674 | 66.2145 | 588 | 21 | 1330 | 239 | 80 | 33.4728 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3783 | 94.8905 | 100.0000 | 85.0000 | 390 | 21 | 51 | 0 | 0 | ||