PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
2501-2550 / 86044 show all
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9390
64.2764
95.8149
73.3607
54053004540323665
27.5424
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
26.8074
23.6447
30.9468
56.6057
929300092520642051
99.3702
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
46.8191
40.0480
56.3456
64.3182
20022997198915411431
92.8618
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
46.8191
40.0480
56.3456
64.3182
20022997198915411431
92.8618
ckim-vqsrSNPtvHG002complexvarhet
98.9859
98.0150
99.9763
22.4456
14773929921476623514
40.0000
qzeng-customSNPtvmap_l100_m2_e1het
88.6428
81.2273
97.5483
82.6203
12946299212931325244
75.0769
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
21.8358
0.0000
0.0000
8352989000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
61.8938
45.0533
98.8388
35.9607
2450298821282522
88.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
44.4716
32.8160
68.9674
74.6267
145929871289580148
25.5172
astatham-gatkSNPtimap_l100_m0_e0*
92.5350
86.2891
99.7557
72.1287
187862985187834624
52.1739
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
83.2118
71.5131
99.4866
35.3667
7491298475583939
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.3563
63.1748
99.7477
25.6850
5114298151401313
100.0000
qzeng-customSNPtvmap_l100_m2_e0het
88.5810
81.1371
97.5288
82.6321
12801297612787324244
75.3086
anovak-vgINDELD16_PLUS**
64.9199
56.1321
76.9701
52.6377
3808297637801131815
72.0601
qzeng-customINDELI1_5*hetalt
84.6275
73.4792
99.7637
61.8865
82262969337886
75.0000
qzeng-customINDELI1_5HG002compoundhethetalt
84.6325
73.4723
99.7902
54.7416
82122965332975
71.4286
mlin-fermikitSNPtvmap_l125_m0_e0het
48.9678
32.6289
98.0822
65.3700
143629651432280
0.0000
qzeng-customSNPtvmap_l100_m1_e0het
88.3933
80.7745
97.5991
81.8251
12453296412439306244
79.7386
anovak-vgSNPtimap_l100_m2_e1het
80.9356
90.4328
73.2435
73.3025
27998296227782101492220
21.8741
asubramanian-gatkSNPtvmap_l100_m0_e0homalt
37.6187
23.1669
100.0000
87.8146
891295589100
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
raldana-dualsentieonINDEL*HG002compoundhet*
92.3506
90.1368
94.6759
61.0439
2700529552688715121502
99.3386
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
54.8776
37.8708
99.6098
30.9469
18002953178777
100.0000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.8916
83.4278
44.3245
56.1428
148662953149401876618665
99.4618
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
72.4419
70.6939
74.2785
64.5876
71212952702624332324
95.5199
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
33.8729
24.3264
55.7519
39.1474
9482949173513771147
83.2970
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
56.7821
0.0000
0.0000
38682944000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.0836
24.4547
56.2198
65.7568
9532944931725695
95.8621
gduggal-bwavardSNPtvHG002complexvarhomalt
98.3914
96.9047
99.9244
20.9085
921672944899126835
51.4706
anovak-vgSNPtimap_l100_m2_e0het
80.8461
90.4056
73.1149
73.2980
27684293827470101012208
21.8592
gduggal-snapfbSNP*HG002complexvar*
99.1200
99.6105
98.6343
21.7486
7514472938752277104161326
12.7304
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.8636
83.8324
52.8950
61.2756
152292937151741351312202
90.2982
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.8636
83.8324
52.8950
61.2756
152292937151741351312202
90.2982
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.0328
54.2991
91.0658
88.7322
34862934348634280
23.3918
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.0328
54.2991
91.0658
88.7322
34862934348634280
23.3918
gduggal-bwaplatSNPtvmap_l100_m0_e0het
74.3090
59.3741
99.2822
90.5912
4288293442883110
32.2581
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.8549
24.7113
59.1245
71.3782
9632934959663642
96.8326
ckim-gatkSNPtimap_l100_m0_e0homalt
76.7317
62.2717
99.9381
70.4634
48412933484132
66.6667
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
76.1186
81.3959
71.4838
54.5214
1282829321348953812743
50.9757
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
24.2451
16.1226
48.8616
65.3414
5632929558584571
97.7740
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
87.2098
85.2583
89.2527
52.9223
1693429282799533713181
94.3637
gduggal-bwaplatSNP*map_l250_m1_e0het
55.4141
38.4227
99.3482
97.7302
182729281829123
25.0000
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
62.9939
46.2118
98.9156
35.8827
2513292520982320
86.9565
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
81.2553
73.6695
90.5826
44.2627
818129242068215132
61.3953
jpowers-varprowlINDELD16_PLUS**
60.4248
56.9575
64.3415
68.1361
38642920387421472111
98.3232
ckim-gatkINDEL***
99.2271
99.1551
99.2992
60.7185
341631291134149224101553
64.4398
mlin-fermikitSNPtiHG002complexvarhomalt
98.3813
98.4958
98.2669
18.8239
190554291019057233613261
97.0247
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.5291
86.9258
88.1409
52.6080
1934129092014927111465
54.0391
mlin-fermikitINDELD6_15*hetalt
78.2531
64.4238
99.6427
35.0794
5266290852981918
94.7368