PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 478 479 480 481 482 483 484 485 486 ... 1720 1721 » 24051-24100 / 86044 show all
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.6009	92.0821	99.3994	59.3902	314	27	331	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7919	97.6127	100.0000	42.4274	1104	27	1110	0	0
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	38.1138	46.0000	32.5359	39.0671	23	27	68	141	121	85.8156
anovak-vg	INDEL	*	map_l125_m2_e0	hetalt	0.0000	35.7143	0.0000	0.0000	15	27	0	0	0
anovak-vg	INDEL	D16_PLUS	map_l100_m2_e1	het	61.1033	47.0588	87.0968	85.9091	24	27	27	4	3	75.0000
anovak-vg	INDEL	D6_15	map_l100_m1_e0	het	76.0494	78.5714	73.6842	85.5238	99	27	112	40	23	57.5000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het		0.0000	0.0000	87.5000	0	27	0	1	1	100.0000
astatham-gatk	SNP	tv	map_l150_m0_e0	homalt	98.8226	97.9669	99.6935	75.2231	1301	27	1301	4	3	75.0000
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.3469	83.8323	97.9592	70.6587	140	27	144	3	3	100.0000
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.8761	98.7371	99.0155	76.7875	2111	27	2112	21	2	9.5238
bgallagher-sentieon	INDEL	*	map_l125_m1_e0	*	98.3703	98.7186	98.0245	87.6918	2080	27	2084	42	9	21.4286
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.9824	97.9405	98.0243	36.9430	1284	27	1290	26	13	50.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3940	99.7649	97.0603	61.7981	11457	27	11457	347	341	98.2709
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3838	98.8184	99.9558	47.5296	2258	27	2261	1	0	0.0000
asubramanian-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	95.6909	92.2636	99.3827	86.3464	322	27	322	2	1	50.0000
asubramanian-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	95.8748	92.5824	99.4100	87.0065	337	27	337	2	1	50.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2985	99.5634	99.0351	56.4261	6157	27	6158	60	1	1.6667
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4177	98.8829	99.9582	72.7717	2390	27	2394	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	HG002complexvar	het	99.2727	98.8535	99.6955	59.4318	2328	27	2292	7	6	85.7143
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4872	99.3714	99.6033	48.0102	4268	27	4268	17	0	0.0000
bgallagher-sentieon	SNP	*	map_l150_m0_e0	homalt	99.5466	99.3397	99.7544	73.4273	4062	27	4062	10	8	80.0000
bgallagher-sentieon	SNP	*	map_l250_m2_e0	homalt	99.3276	98.9948	99.6627	86.1668	2659	27	2659	9	7	77.7778
bgallagher-sentieon	SNP	*	map_l250_m2_e1	homalt	99.3355	99.0066	99.6667	86.2231	2691	27	2691	9	7	77.7778
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	69.3125	68.9655	69.6629	88.8471	60	27	62	27	20	74.0741
ltrigg-rtg1	INDEL	D1_5	map_l125_m0_e0	het	95.7836	92.1739	99.6875	74.7036	318	27	319	1	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4898	99.2366	99.7443	67.0997	3510	27	3511	9	6	66.6667
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.9880	99.0063	98.9698	87.7821	2690	27	2690	28	12	42.8571
jli-custom	SNP	*	map_l250_m2_e0	homalt	99.3833	98.9948	99.7749	85.5202	2659	27	2659	6	6	100.0000
jli-custom	SNP	*	map_l250_m2_e1	homalt	99.3906	99.0066	99.7775	85.5799	2691	27	2691	6	6	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9872	99.1753	96.8273	68.0073	3247	27	3235	106	103	97.1698
jmaeng-gatk	INDEL	I1_5	map_siren	het	97.6442	98.3938	96.9060	85.7250	1654	27	1660	53	5	9.4340
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7796	97.1338	98.4340	74.7885	915	27	880	14	9	64.2857
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0330	98.6660	99.4027	68.8043	1997	27	1997	12	2	16.6667
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	3.5714	0.0000	0.0000	1	27	0	0	0
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	91.0964	94.2553	88.1423	65.1755	443	27	446	60	58	96.6667
jpowers-varprowl	INDEL	I1_5	map_l150_m1_e0	het	92.6746	90.9699	94.4444	91.6035	272	27	272	16	9	56.2500
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	85.3199	80.0000	91.3978	73.4286	108	27	85	8	8	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.5393	89.0244	98.5366	84.9486	219	27	202	3	1	33.3333
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.8974	96.3612	97.4395	71.6647	715	27	685	18	7	38.8889
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.8486	95.7878	100.0000	40.6160	614	27	617	0	0
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e0	*	96.8435	94.7977	98.9796	86.8102	492	27	485	5	1	20.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e0	het	95.1038	91.2621	99.2832	83.3631	282	27	277	2	0	0.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e1	*	96.9175	94.9153	99.0060	86.8531	504	27	498	5	1	20.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e1	het	95.2326	91.4826	99.3031	83.5057	290	27	285	2	0	0.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9815	99.4242	98.5428	38.7768	4662	27	4666	69	1	1.4493
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2259	98.5684	99.8923	66.7145	1859	27	1855	2	2	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3113	99.2548	99.3680	72.5172	3596	27	3616	23	5	21.7391
gduggal-snapfb	INDEL	D16_PLUS	map_l125_m1_e0	*		0.0000	0.0000	0.0000	0	27	0	0	0
gduggal-snapfb	INDEL	D16_PLUS	map_l125_m2_e0	*		0.0000	0.0000	0.0000	0	27	0	0	0
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	88.1961	82.5806	94.6309	78.0882	128	27	141	8	8	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge