PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23751-23800 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | HG002complexvar | hetalt | 90.1007 | 85.9903 | 94.6237 | 41.1392 | 178 | 29 | 176 | 10 | 10 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | * | 77.7005 | 91.2387 | 67.6609 | 95.5856 | 302 | 29 | 431 | 206 | 49 | 23.7864 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | * | 77.7498 | 91.2913 | 67.7067 | 95.6730 | 304 | 29 | 434 | 207 | 49 | 23.6715 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 92.9440 | 0.0000 | 0.0000 | 382 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | het | 87.6928 | 97.6911 | 79.5511 | 87.5070 | 1227 | 29 | 1595 | 410 | 161 | 39.2683 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | hetalt | 0.0000 | 39.5833 | 0.0000 | 0.0000 | 19 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 65.7441 | 83.6158 | 54.1667 | 62.4609 | 148 | 29 | 195 | 165 | 113 | 68.4848 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4743 | 97.4291 | 99.5421 | 56.2675 | 1099 | 29 | 1087 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 34.0426 | 21.6216 | 80.0000 | 86.6667 | 8 | 29 | 8 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 79.5082 | 76.9841 | 82.2034 | 92.3674 | 97 | 29 | 97 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.3067 | 96.2092 | 85.0867 | 94.8490 | 736 | 29 | 736 | 129 | 12 | 9.3023 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | * | 83.1665 | 75.2137 | 93.0000 | 84.8485 | 88 | 29 | 93 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | homalt | 37.2562 | 91.1854 | 23.4106 | 77.1726 | 300 | 29 | 313 | 1024 | 936 | 91.4062 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 60.0266 | 74.1071 | 50.4425 | 79.7491 | 83 | 29 | 57 | 56 | 18 | 32.1429 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e0 | het | 91.3175 | 97.9152 | 85.5528 | 92.0328 | 1362 | 29 | 1362 | 230 | 74 | 32.1739 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | het | 91.2339 | 97.9403 | 85.3870 | 92.0826 | 1379 | 29 | 1379 | 236 | 77 | 32.6271 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 38.2525 | 82.8402 | 24.8677 | 55.3895 | 140 | 29 | 141 | 426 | 425 | 99.7653 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 1 | 29 | 0 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.3468 | 98.8372 | 60.8781 | 62.7229 | 2465 | 29 | 2482 | 1595 | 17 | 1.0658 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | het | 93.7015 | 94.9301 | 92.5043 | 90.6200 | 543 | 29 | 543 | 44 | 9 | 20.4545 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 47.8632 | 36.3636 | 70.0000 | 84.6154 | 16 | 28 | 7 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.5197 | 98.8415 | 83.4904 | 85.3580 | 2389 | 28 | 2392 | 473 | 36 | 7.6110 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | hetalt | 24.6914 | 15.1515 | 66.6667 | 99.0491 | 5 | 28 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 42.3077 | 28.2051 | 84.6154 | 70.4545 | 11 | 28 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | segdup | hetalt | 56.4516 | 41.6667 | 87.5000 | 98.6644 | 20 | 28 | 21 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.2692 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.7500 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.9130 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | * | 90.6741 | 94.8435 | 86.8559 | 87.7132 | 515 | 28 | 826 | 125 | 46 | 36.8000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6458 | 97.9754 | 99.3253 | 54.0950 | 1355 | 28 | 1325 | 9 | 5 | 55.5556 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | het | 91.1754 | 97.9026 | 85.3133 | 91.4837 | 1307 | 28 | 1307 | 225 | 73 | 32.4444 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.1741 | 82.9268 | 31.0421 | 68.1047 | 136 | 28 | 140 | 311 | 310 | 99.6785 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | * | 78.4141 | 76.0684 | 80.9091 | 92.1090 | 89 | 28 | 89 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.2682 | 73.5849 | 44.2529 | 77.4611 | 78 | 28 | 77 | 97 | 94 | 96.9072 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||