PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23451-23500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 35.4839 | 26.8293 | 52.3810 | 97.9866 | 11 | 30 | 11 | 10 | 4 | 40.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 72.9446 | 66.2921 | 81.0811 | 71.4286 | 59 | 30 | 60 | 14 | 14 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.0827 | 95.2305 | 99.0083 | 93.3038 | 599 | 30 | 599 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | segdup | het | 95.9597 | 99.4326 | 92.7212 | 94.3028 | 5257 | 30 | 5261 | 413 | 3 | 0.7264 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | * | 97.4847 | 96.5986 | 98.3871 | 87.4093 | 852 | 30 | 854 | 14 | 4 | 28.5714 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 38.7755 | 0.0000 | 0.0000 | 19 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | het | 87.6002 | 97.6341 | 79.4365 | 87.6420 | 1238 | 30 | 1607 | 416 | 161 | 38.7019 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 25 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 94.9724 | 91.2023 | 99.0676 | 78.9189 | 311 | 30 | 425 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | homalt | 95.0081 | 91.2536 | 99.0847 | 78.9803 | 313 | 30 | 433 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7542 | 70.2970 | 21.3514 | 93.1022 | 71 | 30 | 79 | 291 | 7 | 2.4055 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 3.2258 | 0.0000 | 0.0000 | 1 | 30 | 0 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 57.6740 | 98.5178 | 40.7711 | 77.3433 | 1994 | 30 | 2041 | 2965 | 42 | 1.4165 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 44.2331 | 96.9758 | 28.6507 | 74.2013 | 962 | 30 | 981 | 2443 | 19 | 0.7777 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | * | 95.2145 | 95.8159 | 94.6207 | 88.3889 | 687 | 30 | 686 | 39 | 8 | 20.5128 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | * | 95.5016 | 96.0682 | 94.9416 | 89.0312 | 733 | 30 | 732 | 39 | 8 | 20.5128 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | * | 95.4657 | 96.1440 | 94.7970 | 88.9775 | 748 | 30 | 747 | 41 | 8 | 19.5122 | |
| gduggal-snapplat | SNP | ti | * | hetalt | 95.9951 | 94.8454 | 97.1731 | 52.0745 | 552 | 30 | 550 | 16 | 15 | 93.7500 | |
| gduggal-snapplat | SNP | ti | HG002compoundhet | hetalt | 97.1675 | 94.8187 | 99.6357 | 22.1277 | 549 | 30 | 547 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | segdup | homalt | 99.3958 | 99.0735 | 99.7201 | 90.1395 | 3208 | 30 | 3207 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 56.5217 | 0.0000 | 0.0000 | 39 | 30 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.8537 | 100.0000 | 298 | 30 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1656 | 90.9091 | 80.1047 | 46.7967 | 300 | 30 | 1071 | 266 | 88 | 33.0827 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.0137 | 96.8220 | 99.2350 | 34.3144 | 914 | 30 | 908 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | het | 95.9122 | 96.4706 | 95.3602 | 73.5551 | 820 | 30 | 781 | 38 | 14 | 36.8421 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.3799 | 96.2169 | 98.5714 | 78.0188 | 763 | 30 | 759 | 11 | 1 | 9.0909 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | het | 97.3736 | 96.2963 | 98.4752 | 78.2597 | 780 | 30 | 775 | 12 | 1 | 8.3333 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8014 | 99.7293 | 99.8736 | 52.3918 | 11054 | 30 | 11063 | 14 | 9 | 64.2857 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 56.7042 | 73.6842 | 46.0843 | 75.6598 | 84 | 30 | 153 | 179 | 4 | 2.2346 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 56.8558 | 74.1379 | 46.1078 | 77.3098 | 86 | 30 | 154 | 180 | 4 | 2.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 56.6467 | 74.1379 | 45.8333 | 77.4799 | 86 | 30 | 154 | 182 | 4 | 2.1978 | |
| qzeng-custom | SNP | tv | HG002compoundhet | homalt | 98.8473 | 99.1145 | 98.5816 | 49.2075 | 3358 | 30 | 2780 | 40 | 35 | 87.5000 | |