PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23351-23400 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3066 | 98.7971 | 97.8209 | 68.6304 | 2464 | 30 | 2469 | 55 | 1 | 1.8182 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.4460 | 89.1304 | 78.4431 | 93.1585 | 246 | 30 | 262 | 72 | 4 | 5.5556 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3721 | 99.2620 | 99.4824 | 48.6065 | 4035 | 30 | 4036 | 21 | 4 | 19.0476 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2455 | 99.2320 | 99.2591 | 40.7060 | 3876 | 30 | 3885 | 29 | 10 | 34.4828 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m1_e0 | homalt | 97.8673 | 96.4953 | 99.2788 | 90.2072 | 826 | 30 | 826 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0141 | 98.5968 | 99.4350 | 71.9122 | 2108 | 30 | 2112 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8315 | 98.4480 | 99.2179 | 58.3587 | 1903 | 30 | 1903 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0783 | 98.8658 | 97.3033 | 81.4881 | 2615 | 30 | 2634 | 73 | 1 | 1.3699 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2906 | 99.5974 | 98.9856 | 37.6602 | 7422 | 30 | 7416 | 76 | 2 | 2.6316 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | homalt | 98.6382 | 97.6209 | 99.6769 | 78.6515 | 1231 | 30 | 1234 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | homalt | 98.6597 | 97.6581 | 99.6820 | 78.7966 | 1251 | 30 | 1254 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1316 | 82.0359 | 100.0000 | 64.7355 | 137 | 30 | 140 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2940 | 96.7497 | 99.8884 | 27.0952 | 893 | 30 | 895 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | het | 97.5431 | 99.0503 | 96.0810 | 78.7734 | 3129 | 30 | 2893 | 118 | 85 | 72.0339 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.1538 | 87.8543 | 96.8958 | 47.4971 | 217 | 30 | 437 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 3.2258 | 0.0000 | 0.0000 | 1 | 30 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.8710 | 72.2222 | 100.0000 | 64.4231 | 78 | 30 | 74 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6390 | 96.2169 | 99.1037 | 24.2483 | 763 | 30 | 774 | 7 | 6 | 85.7143 | |
| dgrover-gatk | SNP | ti | HG002compoundhet | * | 99.8369 | 99.8284 | 99.8455 | 35.6925 | 17448 | 30 | 17446 | 27 | 21 | 77.7778 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.2028 | 81.7073 | 76.8473 | 78.8981 | 134 | 30 | 156 | 47 | 42 | 89.3617 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | * | 81.2950 | 79.0210 | 83.7037 | 88.3520 | 113 | 30 | 113 | 22 | 15 | 68.1818 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.5810 | 88.7218 | 92.5197 | 79.4165 | 236 | 30 | 235 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 67.9245 | 54.5455 | 90.0000 | 84.1897 | 36 | 30 | 36 | 4 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6035 | 99.5149 | 99.6923 | 54.6489 | 6154 | 30 | 6156 | 19 | 5 | 26.3158 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9430 | 98.7588 | 99.1279 | 78.7129 | 2387 | 30 | 2387 | 21 | 17 | 80.9524 | |
| egarrison-hhga | SNP | tv | segdup | het | 99.4044 | 99.4326 | 99.3762 | 90.4305 | 5257 | 30 | 5257 | 33 | 2 | 6.0606 | |
| eyeh-varpipe | INDEL | * | segdup | homalt | 94.0927 | 96.8750 | 91.4657 | 93.3366 | 930 | 30 | 986 | 92 | 89 | 96.7391 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | * | 97.7081 | 98.0806 | 97.3384 | 87.7968 | 1533 | 30 | 1536 | 42 | 9 | 21.4286 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | het | 96.1223 | 98.2639 | 94.0720 | 78.9357 | 1698 | 30 | 1698 | 107 | 105 | 98.1308 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | * | 96.0079 | 96.0682 | 95.9477 | 92.8545 | 733 | 30 | 734 | 31 | 4 | 12.9032 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1494 | 96.8783 | 89.6970 | 74.8348 | 931 | 30 | 888 | 102 | 92 | 90.1961 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6974 | 95.4955 | 97.9299 | 88.5024 | 636 | 30 | 615 | 13 | 5 | 38.4615 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6974 | 95.4955 | 97.9299 | 88.5024 | 636 | 30 | 615 | 13 | 5 | 38.4615 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | * | 97.3838 | 96.3855 | 98.4029 | 90.0233 | 800 | 30 | 801 | 13 | 2 | 15.3846 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7972 | 93.9638 | 97.7035 | 92.7237 | 467 | 30 | 468 | 11 | 1 | 9.0909 | |
| bgallagher-sentieon | INDEL | * | map_l100_m1_e0 | het | 98.0470 | 98.6577 | 97.4438 | 85.8435 | 2205 | 30 | 2211 | 58 | 11 | 18.9655 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.8572 | 96.8783 | 89.1566 | 74.3497 | 931 | 30 | 888 | 108 | 98 | 90.7407 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.5378 | 41.1765 | 46.1864 | 59.0278 | 21 | 30 | 109 | 127 | 107 | 84.2520 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 15 | 30 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |