PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23251-23300 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9169 | 99.3027 | 98.5341 | 69.1612 | 4415 | 31 | 4369 | 65 | 62 | 95.3846 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8266 | 95.4876 | 98.2036 | 81.6484 | 656 | 31 | 656 | 12 | 10 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6105 | 97.2591 | 100.0000 | 41.6754 | 1100 | 31 | 1107 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | * | 96.7213 | 96.3827 | 97.0623 | 87.8080 | 826 | 31 | 826 | 25 | 6 | 24.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | * | 96.7147 | 96.4368 | 96.9942 | 87.9173 | 839 | 31 | 839 | 26 | 6 | 23.0769 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7268 | 99.6801 | 99.7735 | 67.9777 | 9661 | 31 | 9691 | 22 | 18 | 81.8182 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7983 | 98.3069 | 99.2946 | 51.3464 | 1800 | 31 | 1830 | 13 | 2 | 15.3846 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 96.8251 | 96.3827 | 97.2716 | 86.3349 | 826 | 31 | 820 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 96.8730 | 96.4368 | 97.3131 | 86.4514 | 839 | 31 | 833 | 23 | 6 | 26.0870 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3086 | 96.6046 | 98.0229 | 87.6589 | 882 | 31 | 942 | 19 | 9 | 47.3684 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.5783 | 86.5217 | 50.2525 | 62.0690 | 199 | 31 | 199 | 197 | 181 | 91.8782 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 25.0000 | 16.2162 | 54.5455 | 77.0833 | 6 | 31 | 6 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.1856 | 91.0405 | 73.2558 | 68.6589 | 315 | 31 | 315 | 115 | 55 | 47.8261 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0894 | 97.5318 | 94.6889 | 83.3900 | 1225 | 31 | 1248 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.1799 | 75.0000 | 15.8576 | 76.7407 | 93 | 31 | 98 | 520 | 4 | 0.7692 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | * | 86.5802 | 95.6764 | 79.0634 | 89.6914 | 686 | 31 | 861 | 228 | 53 | 23.2456 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | * | 72.5984 | 69.9029 | 75.5102 | 84.8765 | 72 | 31 | 111 | 36 | 22 | 61.1111 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | func_cds | het | 98.7765 | 98.8333 | 98.7199 | 41.1608 | 2626 | 31 | 2622 | 34 | 9 | 26.4706 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 34.3511 | 75.0000 | 22.2772 | 90.2651 | 93 | 31 | 90 | 314 | 7 | 2.2293 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 90.5611 | 95.6764 | 85.9649 | 90.8486 | 686 | 31 | 686 | 112 | 20 | 17.8571 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 78.2258 | 75.7812 | 80.8333 | 92.4051 | 97 | 31 | 97 | 23 | 21 | 91.3043 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | het | 4.7472 | 34.0426 | 2.5515 | 55.6957 | 16 | 31 | 26 | 993 | 986 | 99.2951 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.0244 | 34.0426 | 45.7143 | 78.5276 | 16 | 31 | 16 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | homalt | 95.0538 | 93.4461 | 96.7177 | 90.8251 | 442 | 31 | 442 | 15 | 11 | 73.3333 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.1516 | 96.8750 | 75.9593 | 78.6419 | 961 | 31 | 970 | 307 | 3 | 0.9772 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.5299 | 98.5500 | 94.5910 | 50.5417 | 2107 | 31 | 2116 | 121 | 1 | 0.8264 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2467 | 94.3223 | 94.1712 | 78.1883 | 515 | 31 | 517 | 32 | 11 | 34.3750 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 61.1189 | 45.6140 | 92.5926 | 99.6543 | 26 | 31 | 25 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | * | 83.4615 | 75.3968 | 93.4579 | 84.7795 | 95 | 31 | 100 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 58.1081 | 0.0000 | 0.0000 | 43 | 31 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | * | 81.3037 | 72.8070 | 92.0455 | 76.5957 | 83 | 31 | 81 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | * | 48.0801 | 34.0426 | 81.8182 | 97.4713 | 16 | 31 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | * | 78.8462 | 72.5664 | 86.3158 | 98.4655 | 82 | 31 | 82 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | * | 79.0476 | 72.8070 | 86.4583 | 98.4991 | 83 | 31 | 83 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7353 | 98.9667 | 98.5050 | 75.1773 | 2969 | 31 | 2965 | 45 | 33 | 73.3333 | |