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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 453 454 455 456 457 458 459 460 461 ... 1720 1721 » 22801-22850 / 86044 show all
cchapple-custom	INDEL	D6_15	map_siren	*	94.5230	93.5167	95.5513	80.9225	476	33	494	23	10	43.4783
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.0216	93.3602	96.7433	74.7215	464	33	505	17	13	76.4706
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.6872	95.4167	97.9920	85.6042	687	33	732	15	12	80.0000
cchapple-custom	SNP	ti	segdup	*	99.6040	99.8311	99.3779	91.2552	19504	33	19490	122	16	13.1148
ciseli-custom	INDEL	*	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	33	0	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6645	92.0290	97.4555	73.3740	381	33	383	10	10	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5840	97.5019	99.6904	61.7751	1288	33	1288	4	2	50.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1672	98.9840	99.3511	65.9333	3215	33	3215	21	8	38.0952
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5417	99.5043	99.5791	77.6913	6624	33	6624	28	9	32.1429
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	homalt	50.2549	88.5813	35.0778	60.5689	256	33	248	459	398	86.7102
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.9379	91.7293	37.2045	59.0488	366	33	362	611	566	92.6350
ciseli-custom	INDEL	D16_PLUS	map_siren	het	66.7957	57.6923	79.3103	83.8440	45	33	46	12	5	41.6667
ciseli-custom	INDEL	D1_5	map_l125_m0_e0	homalt	78.7671	77.7027	79.8611	87.8069	115	33	115	29	24	82.7586
ciseli-custom	INDEL	D6_15	map_l150_m1_e0	*	55.9441	54.7945	57.1429	94.0171	40	33	40	30	13	43.3333
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3735	99.2041	99.5436	81.7204	4113	33	4144	19	8	42.1053
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
ckim-gatk	INDEL	*	map_l100_m2_e0	het	96.1386	98.5696	93.8246	90.4219	2274	33	2279	150	14	9.3333
ckim-gatk	INDEL	*	map_l100_m2_e1	het	96.1964	98.5915	93.9148	90.4620	2310	33	2315	150	14	9.3333
ckim-gatk	INDEL	*	map_l125_m2_e1	*	96.6536	98.5169	94.8596	91.3812	2192	33	2196	119	11	9.2437
ckim-gatk	INDEL	D6_15	HG002complexvar	het	99.0142	98.9423	99.0862	59.4709	3087	33	3036	28	22	78.5714
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	84.1283	97.5299	73.9648	66.0177	1303	33	1304	459	12	2.6144
ckim-dragen	INDEL	*	map_l100_m0_e0	het	95.6303	96.7679	94.5192	88.5902	988	33	983	57	4	7.0175
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.9551	95.5466	98.4058	74.9000	708	33	679	11	8	72.7273
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6864	99.1226	98.2540	71.3658	3728	33	3714	66	64	96.9697
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6864	99.1226	98.2540	71.3658	3728	33	3714	66	64	96.9697
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	het	96.1240	95.7529	96.4981	85.9049	744	33	744	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	het	96.2025	95.8386	96.5693	87.1089	760	33	760	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	het	96.2825	95.9259	96.6418	87.1729	777	33	777	27	3	11.1111
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	74.6483	60.2410	98.1132	32.9114	50	33	52	1	1	100.0000
eyeh-varpipe	INDEL	*	map_l125_m0_e0	*	96.5567	96.2585	96.8567	95.6158	849	33	1325	43	28	65.1163
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.0772	97.3214	98.8449	61.5726	1199	33	1198	14	12	85.7143
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.4468	99.1471	95.8038	68.8013	3836	33	3790	166	160	96.3855
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.5585	93.7023	99.5943	53.9683	491	33	491	2	1	50.0000
ckim-vqsr	INDEL	*	segdup	*	98.6516	98.7089	98.5943	95.8809	2523	33	2525	36	10	27.7778
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.0772	97.3214	98.8449	61.2532	1199	33	1198	14	12	85.7143
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	het	95.6835	95.6806	95.6863	92.2445	731	33	732	33	3	9.0909
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6645	92.0290	97.4555	73.3740	381	33	383	10	10	100.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	80.7018	67.6471	100.0000	53.9474	69	33	70	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	85.8676	81.3559	90.9091	64.8402	144	33	140	14	3	21.4286
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1978	98.9840	99.4125	65.8284	3215	33	3215	19	7	36.8421
egarrison-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1715	88.0000	92.4528	85.4555	242	33	245	20	12	60.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.4850	97.5225	97.4474	70.6155	1299	33	1298	34	32	94.1176
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
raldana-dualsentieon	INDEL	I1_5	map_siren	het	98.5075	98.0369	98.9826	78.7269	1648	33	1654	17	1	5.8824
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1599	90.8840	87.5000	82.4945	329	33	210	30	30	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
hfeng-pmm2	SNP	ti	segdup	het	99.5229	99.7257	99.3210	90.4269	11997	33	11995	82	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.7223	3417	33	3414	3	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.2210	96.5042	100.0000	31.7460	911	33	989	0	0

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