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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 451 452 453 454 455 456 457 458 459 ... 1720 1721 » 22701-22750 / 86044 show all
qzeng-custom	INDEL	*	map_l100_m2_e1	hetalt	85.7143	75.0000	100.0000	91.4013	99	33	27	0	0
qzeng-custom	SNP	*	func_cds	*	99.7598	99.8182	99.7016	28.7413	18117	33	18040	54	4	7.4074
qzeng-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	97.6562	98.9840	96.3636	77.0001	3215	33	3233	122	9	7.3771
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.5593	97.6793	93.5294	90.1841	1389	33	1431	99	25	25.2525
qzeng-custom	INDEL	D1_5	map_l250_m2_e0	het	80.5528	72.7273	90.2655	98.0877	88	33	102	11	9	81.8182
qzeng-custom	INDEL	D1_5	map_l250_m2_e1	het	80.6897	72.9508	90.2655	98.1239	89	33	102	11	9	81.8182
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0287	86.6397	93.6937	56.8932	214	33	208	14	14	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	84.6847	74.0157	98.9474	35.8108	94	33	94	1	1	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	88.5017	79.3750	100.0000	76.3916	127	33	123	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	91.0540	83.9806	99.4286	47.7612	173	33	174	1	1	100.0000
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0190	98.1121	99.9429	58.3888	1715	33	1750	1	1	100.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.7724	88.0435	93.6759	87.8424	243	33	237	16	1	6.2500
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2125	91.3158	99.4565	63.2368	347	33	366	2	2	100.0000
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0536	98.9058	99.2019	69.0574	2983	33	2983	24	5	20.8333
bgallagher-sentieon	SNP	*	map_l250_m0_e0	*	97.7220	98.4543	97.0005	93.1217	2102	33	2102	65	12	18.4615
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	het	98.2995	98.9997	97.6091	90.8150	3266	33	3266	80	16	20.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.7580	97.6793	97.8367	88.4863	1389	33	1402	31	10	32.2581
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3981	98.8035	100.0000	36.3869	2725	33	2729	0	0
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.6197	95.7908	99.5198	33.5726	751	33	829	4	4	100.0000
anovak-vg	INDEL	*	tech_badpromoters	*	66.4036	56.5789	80.3571	44.5545	43	33	45	11	10	90.9091
anovak-vg	INDEL	D16_PLUS	map_siren	het	65.2174	57.6923	75.0000	77.5439	45	33	48	16	13	81.2500
anovak-vg	INDEL	D1_5	map_l100_m1_e0	hetalt	0.0000	29.7872	0.0000	0.0000	14	33	0	0	0
anovak-vg	INDEL	D1_5	map_l100_m2_e0	hetalt	0.0000	31.2500	0.0000	0.0000	15	33	0	0	0
anovak-vg	INDEL	D6_15	map_l100_m2_e1	het	75.1170	75.5556	74.6835	86.0301	102	33	118	40	23	57.5000
anovak-vg	INDEL	D6_15	map_l125_m2_e0	*	76.3127	73.8095	78.9916	88.9713	93	33	94	25	15	60.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	5.7143	0.0000	0.0000	2	33	0	0	0
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
asubramanian-gatk	INDEL	I16_PLUS	HG002complexvar	het	97.3776	95.0376	99.8358	65.4566	632	33	608	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.7884	96.1222	99.5134	88.6370	818	33	818	4	4	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3923	97.0109	99.8136	86.7219	1071	33	1071	2	2	100.0000
asubramanian-gatk	INDEL	*	segdup	het	98.2193	97.7490	98.6942	95.9225	1433	33	1436	19	2	10.5263
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	95.7178	94.6429	96.8174	68.4294	583	33	578	19	17	89.4737
anovak-vg	INDEL	I1_5	func_cds	het	53.0612	44.0678	66.6667	45.0704	26	33	26	13	3	23.0769
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	64.4166	93.0962	49.2457	68.6592	445	33	457	471	445	94.4798
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	45.0000	0.0000	0.0000	27	33	0	0	0
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	64.1521	78.2895	54.3396	87.4882	119	33	144	121	38	31.4050
ltrigg-rtg1	INDEL	I1_5	map_l125_m1_e0	*	97.6099	96.0241	99.2491	81.0529	797	33	793	6	1	16.6667
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	homalt	99.6993	99.5496	99.8494	70.3647	7294	33	7295	11	11	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	homalt	99.7107	99.5667	99.8552	72.6188	7583	33	7584	11	11	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	homalt	99.7136	99.5710	99.8566	72.6687	7660	33	7662	11	11	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7967	99.6732	99.9204	57.8106	10064	33	10047	8	2	25.0000
jli-custom	SNP	ti	HG002compoundhet	*	99.7826	99.8112	99.7541	35.5495	17445	33	17445	43	22	51.1628
jli-custom	SNP	tv	map_l100_m1_e0	homalt	99.7840	99.6351	99.9335	58.3614	9010	33	9010	6	5	83.3333
jmaeng-gatk	INDEL	*	HG002complexvar	homalt	99.7212	99.8779	99.5650	57.3567	26994	33	27007	118	111	94.0678
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1246	99.5572	98.6958	41.6434	7419	33	7416	98	0	0.0000
jmaeng-gatk	SNP	tv	segdup	het	97.3848	99.3758	95.4719	95.8451	5254	33	5250	249	0	0.0000
jpowers-varprowl	INDEL	*	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	33	0	0	0
jpowers-varprowl	INDEL	D1_5	segdup	homalt	94.4928	90.8078	98.4894	93.0154	326	33	326	5	4	80.0000
ltrigg-rtg1	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0802	86.6397	93.8053	58.5321	214	33	212	14	14	100.0000

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