PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22301-22350 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.4550 | 86.9565 | 37.5546 | 88.1756 | 240 | 36 | 258 | 429 | 7 | 1.6317 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | het | 93.1051 | 98.1443 | 88.5581 | 92.2231 | 1904 | 36 | 1904 | 246 | 34 | 13.8211 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | het | 93.1209 | 98.1679 | 88.5675 | 92.2930 | 1929 | 36 | 1929 | 249 | 34 | 13.6546 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6120 | 99.6463 | 99.5777 | 54.2814 | 10142 | 36 | 10139 | 43 | 40 | 93.0233 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.0354 | 97.2932 | 96.7790 | 40.3219 | 1294 | 36 | 1292 | 43 | 35 | 81.3953 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.7750 | 58.6207 | 60.9756 | 96.0271 | 51 | 36 | 50 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 61.1538 | 60.0000 | 62.3529 | 96.1223 | 54 | 36 | 53 | 32 | 22 | 68.7500 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 50.2732 | 40.0000 | 67.6471 | 91.9622 | 24 | 36 | 23 | 11 | 2 | 18.1818 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7358 | 99.5369 | 99.9354 | 58.2970 | 7738 | 36 | 7738 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7305 | 90.6250 | 86.9136 | 84.8258 | 348 | 36 | 352 | 53 | 21 | 39.6226 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6888 | 99.4087 | 97.9793 | 56.5956 | 6052 | 36 | 6061 | 125 | 121 | 96.8000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7834 | 70.9677 | 93.7500 | 90.7514 | 88 | 36 | 90 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.7609 | 99.6093 | 99.9129 | 63.7805 | 9178 | 36 | 9178 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.7631 | 99.6130 | 99.9137 | 63.7862 | 9266 | 36 | 9266 | 8 | 6 | 75.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.1982 | 95.0000 | 91.4634 | 89.5261 | 684 | 36 | 750 | 70 | 22 | 31.4286 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9708 | 98.8342 | 97.1223 | 75.2765 | 3052 | 36 | 3105 | 92 | 13 | 14.1304 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.6106 | 97.3432 | 76.4021 | 67.2751 | 1319 | 36 | 2493 | 770 | 121 | 15.7143 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 77.6887 | 86.0465 | 70.8108 | 85.0746 | 222 | 36 | 262 | 108 | 10 | 9.2593 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7617 | 87.5000 | 90.0602 | 60.8952 | 252 | 36 | 598 | 66 | 60 | 90.9091 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5538 | 96.9440 | 94.2029 | 48.6379 | 1142 | 36 | 3055 | 188 | 176 | 93.6170 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.9933 | 97.0223 | 98.9839 | 74.5035 | 1173 | 36 | 1169 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0134 | 91.7620 | 98.5037 | 40.9426 | 401 | 36 | 395 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 86.1876 | 77.6398 | 96.8504 | 18.5897 | 125 | 36 | 123 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.5891 | 62.1053 | 96.5517 | 74.3363 | 59 | 36 | 56 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.0707 | 96.2145 | 100.0000 | 78.9928 | 915 | 36 | 876 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 52.0907 | 81.7259 | 38.2284 | 55.9096 | 161 | 36 | 164 | 265 | 242 | 91.3208 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 61.9624 | 60.8696 | 63.0952 | 62.8319 | 56 | 36 | 53 | 31 | 30 | 96.7742 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4326 | 99.2967 | 99.5689 | 75.2558 | 5083 | 36 | 5081 | 22 | 10 | 45.4545 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8135 | 96.1864 | 99.4965 | 31.6116 | 908 | 36 | 988 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8001 | 97.9911 | 97.6098 | 69.6269 | 1756 | 36 | 1756 | 43 | 31 | 72.0930 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0580 | 91.2409 | 99.2084 | 70.5288 | 375 | 36 | 376 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6437 | 99.1903 | 96.1445 | 69.5777 | 4410 | 36 | 4364 | 175 | 167 | 95.4286 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.7873 | 95.7746 | 58.6987 | 85.9415 | 816 | 36 | 830 | 584 | 143 | 24.4863 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2793 | 99.0236 | 99.5363 | 51.7187 | 3651 | 36 | 3649 | 17 | 15 | 88.2353 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.3061 | 95.4603 | 99.2248 | 24.1920 | 757 | 36 | 768 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I1_5 | map_siren | * | 98.4771 | 98.8020 | 98.1543 | 83.2514 | 2969 | 36 | 2978 | 56 | 9 | 16.0714 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 61.4577 | 58.6207 | 64.5833 | 99.8482 | 51 | 36 | 31 | 17 | 5 | 29.4118 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | * | 94.9271 | 95.9184 | 93.9560 | 89.0203 | 846 | 36 | 855 | 55 | 11 | 20.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 89.7143 | 0.0000 | 0.0000 | 314 | 36 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002compoundhet | homalt | 99.4506 | 98.9374 | 99.9692 | 37.6656 | 3352 | 36 | 3246 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.5425 | 98.6389 | 98.4462 | 84.2913 | 2609 | 36 | 2661 | 42 | 10 | 23.8095 | |
| cchapple-custom | SNP | tv | map_l250_m1_e0 | homalt | 97.8520 | 95.7944 | 100.0000 | 84.1085 | 820 | 36 | 820 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4844 | 97.4321 | 99.5596 | 48.5952 | 1328 | 35 | 4973 | 22 | 19 | 86.3636 | |