PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21801-21850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3623 | 97.1387 | 99.6172 | 75.9529 | 1324 | 39 | 1301 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5867 | 99.3693 | 99.8051 | 53.1359 | 6145 | 39 | 6145 | 12 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.6246 | 94.1088 | 97.1901 | 77.6009 | 623 | 39 | 588 | 17 | 5 | 29.4118 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2828 | 95.8599 | 98.7486 | 72.8116 | 903 | 39 | 868 | 11 | 7 | 63.6364 | |
| hfeng-pmm3 | SNP | * | map_l125_m1_e0 | homalt | 99.7929 | 99.7693 | 99.8165 | 66.4802 | 16866 | 39 | 16866 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | homalt | 99.7985 | 99.7755 | 99.8215 | 68.9465 | 17336 | 39 | 17336 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | homalt | 99.8003 | 99.7775 | 99.8231 | 68.9786 | 17493 | 39 | 17493 | 31 | 13 | 41.9355 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | het | 84.9405 | 90.3704 | 80.1262 | 57.0461 | 366 | 39 | 254 | 63 | 59 | 93.6508 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | het | 98.8087 | 98.2872 | 99.3357 | 77.5055 | 2238 | 39 | 2243 | 15 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.9244 | 92.1529 | 97.8678 | 75.1983 | 458 | 39 | 459 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2623 | 98.7000 | 99.8311 | 74.5091 | 2961 | 39 | 2955 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | homalt | 99.9845 | 99.9798 | 99.9891 | 18.4732 | 193424 | 39 | 193416 | 21 | 21 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | segdup | * | 99.7442 | 99.8004 | 99.6881 | 88.7407 | 19498 | 39 | 19496 | 61 | 5 | 8.1967 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2550 | 99.5338 | 98.9778 | 48.7637 | 8327 | 39 | 8327 | 86 | 84 | 97.6744 | |
| jlack-gatk | INDEL | I1_5 | map_siren | * | 97.8278 | 98.7022 | 96.9687 | 83.0880 | 2966 | 39 | 2975 | 93 | 10 | 10.7527 | |
| jlack-gatk | INDEL | I6_15 | HG002complexvar | het | 98.9714 | 98.3439 | 99.6068 | 59.5940 | 2316 | 39 | 2280 | 9 | 8 | 88.8889 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | * | 92.5591 | 97.1533 | 88.3798 | 95.5349 | 1331 | 39 | 1331 | 175 | 20 | 11.4286 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2477 | 99.2381 | 99.2572 | 75.1119 | 5080 | 39 | 5078 | 38 | 20 | 52.6316 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | * | 94.7169 | 98.2240 | 91.4515 | 90.7417 | 2157 | 39 | 2161 | 202 | 13 | 6.4356 | |
| jlack-gatk | INDEL | * | segdup | * | 95.2733 | 98.4742 | 92.2739 | 95.5954 | 2517 | 39 | 2520 | 211 | 15 | 7.1090 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | het | 98.3966 | 97.8735 | 98.9253 | 88.0822 | 1749 | 38 | 1749 | 19 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | het | 98.4472 | 98.0412 | 98.8565 | 88.5422 | 1902 | 38 | 1902 | 22 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | het | 98.4670 | 98.0662 | 98.8712 | 88.6090 | 1927 | 38 | 1927 | 22 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.3647 | 97.9109 | 89.2219 | 85.2038 | 1781 | 38 | 1548 | 187 | 133 | 71.1230 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.3647 | 97.9109 | 89.2219 | 85.2038 | 1781 | 38 | 1548 | 187 | 133 | 71.1230 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | het | 92.3786 | 97.8009 | 87.5259 | 78.5190 | 1690 | 38 | 1691 | 241 | 200 | 82.9876 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.8262 | 71.8519 | 64.2276 | 75.9766 | 97 | 38 | 79 | 44 | 37 | 84.0909 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.4254 | 90.8213 | 96.1832 | 73.6419 | 376 | 38 | 378 | 15 | 8 | 53.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3233 | 94.2598 | 96.4111 | 77.4217 | 624 | 38 | 591 | 22 | 8 | 36.3636 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002compoundhet | het | 86.2040 | 90.6173 | 82.2006 | 57.4966 | 367 | 38 | 254 | 55 | 53 | 96.3636 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6756 | 99.3855 | 99.9675 | 53.7536 | 6146 | 38 | 6146 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | segdup | het | 97.2497 | 99.7806 | 94.8441 | 94.7945 | 17279 | 38 | 17273 | 939 | 5 | 0.5325 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | * | 98.5806 | 98.2921 | 98.8708 | 86.7884 | 2187 | 38 | 2189 | 25 | 8 | 32.0000 | |
| hfeng-pmm2 | SNP | ti | map_siren | homalt | 99.9103 | 99.8998 | 99.9208 | 52.1071 | 37878 | 38 | 37872 | 30 | 20 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | homalt | 99.7967 | 99.8594 | 99.7340 | 55.8371 | 26989 | 38 | 26999 | 72 | 66 | 91.6667 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | het | 98.5219 | 98.2998 | 98.7450 | 82.8675 | 2197 | 38 | 2203 | 28 | 5 | 17.8571 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | * | 99.1319 | 98.7354 | 99.5316 | 79.6028 | 2967 | 38 | 2975 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1748 | 95.9660 | 98.4145 | 72.9224 | 904 | 38 | 869 | 14 | 8 | 57.1429 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6595 | 99.3855 | 99.9350 | 53.0212 | 6146 | 38 | 6146 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | * | 98.1512 | 98.2201 | 98.0823 | 92.9304 | 2097 | 38 | 2097 | 41 | 9 | 21.9512 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | homalt | 95.5388 | 92.5344 | 98.7448 | 78.4685 | 471 | 38 | 472 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | * | 92.6484 | 96.6754 | 88.9435 | 89.1467 | 1105 | 38 | 1086 | 135 | 19 | 14.0741 | |