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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 422 423 424 425 426 427 428 429 430 ... 1720 1721 » 21251-21300 / 86044 show all
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.3962	98.9698	99.8262	37.7685	4035	42	4020	7	2	28.5714
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.6268	98.9870	98.2693	80.7168	4104	42	4145	73	1	1.3699
ltrigg-rtg2	INDEL	*	map_l150_m1_e0	het	96.9589	95.0877	98.9051	82.3832	813	42	813	9	0	0.0000
jpowers-varprowl	INDEL	I1_5	map_l100_m0_e0	*	94.2615	92.2652	96.3462	85.0575	501	42	501	19	12	63.1579
jpowers-varprowl	SNP	*	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
jpowers-varprowl	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	96.7965	98.7069	94.9587	77.6519	3206	42	3221	171	34	19.8830
jpowers-varprowl	SNP	tv	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.6205	96.5909	98.6722	61.1039	1190	42	1189	16	15	93.7500
jpowers-varprowl	INDEL	*	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
jpowers-varprowl	INDEL	*	map_l150_m0_e0	*	92.9134	91.8288	94.0239	93.2052	472	42	472	30	20	66.6667
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m2_e0	*	59.8250	53.3333	68.1159	96.2743	48	42	47	22	19	86.3636
jli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.3549	93.6842	93.0279	84.8155	623	42	467	35	31	88.5714
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5621	93.6267	99.6875	66.3512	617	42	638	2	2	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5621	93.6267	99.6875	66.3512	617	42	638	2	2	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	93.0003	88.7701	97.6540	47.5385	332	42	333	8	2	25.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	93.4330	91.3758	95.5850	59.8048	445	42	433	20	5	25.0000
ckim-isaac	INDEL	D6_15	map_l125_m1_e0	het	50.5747	34.3750	95.6522	94.4175	22	42	22	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4732	97.1869	99.7941	31.3060	1451	42	1454	3	3	100.0000
ckim-vqsr	INDEL	D6_15	HG002complexvar	het	98.8682	98.6538	99.0835	59.5418	3078	42	3027	28	22	78.5714
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	97.5092	96.8061	98.2226	52.3389	1273	42	1271	23	16	69.5652
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4009	91.5493	97.4359	75.4588	455	42	456	12	12	100.0000
ckim-vqsr	SNP	*	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	*	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.4927	96.2865	98.7296	42.4242	1089	42	1088	14	12	85.7143
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e0	homalt	99.7775	99.6410	99.9143	73.3265	11657	42	11657	10	10	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	homalt	99.7799	99.6449	99.9152	73.3597	11785	42	11785	10	10	100.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	87.4670	80.5556	95.6757	56.8765	174	42	177	8	7	87.5000
ckim-isaac	SNP	ti	HG002compoundhet	hetalt	96.2366	92.7461	100.0000	18.6364	537	42	537	0	0
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	73.5901	72.3684	74.8538	88.1906	110	42	128	43	3	6.9767
dgrover-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.3449	96.3190	98.3929	80.3302	1099	42	1102	18	16	88.8889
dgrover-gatk	SNP	*	map_l250_m1_e0	homalt	98.9982	98.2948	99.7117	85.6084	2421	42	2421	7	5	71.4286
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	94.9922	92.1495	98.0159	72.8155	493	42	494	10	10	100.0000
ckim-vqsr	SNP	tv	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	tv	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
astatham-gatk	INDEL	D1_5	map_l125_m2_e1	het	95.7305	94.5455	96.9456	88.5091	728	42	730	23	3	13.0435
asubramanian-gatk	SNP	tv	map_siren	hetalt	65.0000	48.1481	100.0000	83.7500	39	42	39	0	0
bgallagher-sentieon	INDEL	*	map_siren	het	98.7628	99.0683	98.4592	83.3559	4466	42	4473	70	8	11.4286
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6716	99.6463	99.6968	50.6032	11833	42	11838	36	19	52.7778
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	69.9850	66.9291	73.3333	68.5864	85	42	88	32	20	62.5000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4684	98.9668	99.9751	45.9140	4023	42	4023	1	0	0.0000
asubramanian-gatk	INDEL	*	map_l100_m0_e0	homalt	95.2090	91.7485	98.9407	86.3268	467	42	467	5	2	40.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4987	91.5493	97.6445	76.0021	455	42	456	11	11	100.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e0	*	98.1510	98.5427	97.7625	89.3375	2840	42	2840	65	13	20.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	*	98.1725	98.5597	97.7884	89.4056	2874	42	2874	65	13	20.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1247	99.5589	96.7314	45.9773	9479	42	9470	320	309	96.5625
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	39.9479	48.7805	33.8235	55.5556	40	42	69	135	108	80.0000
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	67.1212	72.5490	62.4490	44.0639	111	42	306	184	163	88.5870

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