PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21201-21250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | het | 79.7221 | 68.1481 | 96.0317 | 76.1815 | 92 | 43 | 121 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | homalt | 95.1473 | 92.7365 | 97.6868 | 77.2562 | 549 | 43 | 549 | 13 | 2 | 15.3846 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.2727 | 0.0000 | 0.0000 | 1 | 43 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | het | 91.3804 | 97.1448 | 86.2618 | 95.0573 | 1463 | 43 | 1463 | 233 | 27 | 11.5880 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | het | 97.6481 | 96.9087 | 98.3988 | 86.9392 | 1348 | 43 | 1352 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | het | 97.6418 | 96.9460 | 98.3477 | 87.0294 | 1365 | 43 | 1369 | 23 | 8 | 34.7826 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9332 | 98.3991 | 99.4731 | 46.9555 | 2643 | 43 | 2643 | 14 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7184 | 99.3562 | 96.1338 | 51.2081 | 6636 | 43 | 6639 | 267 | 254 | 95.1311 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6387 | 99.6019 | 99.6756 | 81.2035 | 10758 | 43 | 10754 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8658 | 99.8462 | 99.8855 | 53.8968 | 27916 | 43 | 27913 | 32 | 19 | 59.3750 | |
| rpoplin-dv42 | SNP | ti | segdup | * | 99.7773 | 99.7799 | 99.7748 | 89.3733 | 19494 | 43 | 19492 | 44 | 19 | 43.1818 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8590 | 99.8446 | 99.8734 | 64.1005 | 27635 | 43 | 27622 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | het | 97.3404 | 97.2112 | 97.4700 | 92.1200 | 1464 | 42 | 1464 | 38 | 23 | 60.5263 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.7009 | 93.6842 | 87.9017 | 84.8598 | 623 | 42 | 465 | 64 | 59 | 92.1875 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5094 | 99.3762 | 99.6429 | 67.2531 | 6691 | 42 | 6696 | 24 | 19 | 79.1667 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | het | 97.5874 | 96.8539 | 98.3321 | 86.1464 | 1293 | 42 | 1297 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | het | 97.6497 | 97.6497 | 97.6497 | 86.6731 | 1745 | 42 | 1745 | 42 | 26 | 61.9048 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | het | 97.8098 | 97.8351 | 97.7846 | 87.2638 | 1898 | 42 | 1898 | 43 | 27 | 62.7907 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | het | 97.8128 | 97.8626 | 97.7631 | 87.3293 | 1923 | 42 | 1923 | 44 | 28 | 63.6364 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 70.4225 | 54.3478 | 100.0000 | 51.0204 | 50 | 42 | 48 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9379 | 89.0339 | 99.4135 | 76.1872 | 341 | 42 | 339 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.4421 | 98.3051 | 98.5795 | 46.6205 | 2436 | 42 | 2429 | 35 | 6 | 17.1429 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 74.0741 | 58.8235 | 100.0000 | 75.2066 | 60 | 42 | 60 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | het | 89.9219 | 98.1208 | 82.9876 | 89.4070 | 2193 | 42 | 2200 | 451 | 184 | 40.7982 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | * | 88.9737 | 95.2381 | 83.4826 | 91.4946 | 840 | 42 | 839 | 166 | 31 | 18.6747 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 1 | 42 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 22.0217 | 71.6216 | 13.0112 | 43.9194 | 106 | 42 | 105 | 702 | 699 | 99.5726 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 40.1003 | 26.3158 | 84.2105 | 99.8551 | 15 | 42 | 16 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.3933 | 98.2278 | 49.0105 | 39.1883 | 2328 | 42 | 2328 | 2422 | 2406 | 99.3394 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.5342 | 62.5000 | 92.3077 | 80.9663 | 70 | 42 | 120 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 46.3980 | 31.1475 | 90.9091 | 61.1765 | 19 | 42 | 30 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | het | 96.1817 | 98.2074 | 94.2378 | 90.6863 | 2301 | 42 | 2306 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | * | 96.6186 | 98.1124 | 95.1697 | 91.5159 | 2183 | 42 | 2187 | 111 | 11 | 9.9099 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7927 | 97.6562 | 97.9295 | 69.6398 | 1750 | 42 | 1750 | 37 | 33 | 89.1892 | |