PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21051-21100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.6568 | 87.8116 | 89.5184 | 60.6466 | 317 | 44 | 316 | 37 | 30 | 81.0811 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3119 | 89.8851 | 60.4863 | 71.9881 | 391 | 44 | 398 | 260 | 35 | 13.4615 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 63.4344 | 65.0794 | 61.8705 | 90.0572 | 82 | 44 | 86 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 10.3004 | 6.3830 | 26.6667 | 77.2727 | 3 | 44 | 4 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.2924 | 78.0000 | 80.6283 | 58.3878 | 156 | 44 | 154 | 37 | 34 | 91.8919 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4002 | 93.3232 | 99.6870 | 67.8894 | 615 | 44 | 637 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4002 | 93.3232 | 99.6870 | 67.8894 | 615 | 44 | 637 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 82.1862 | 0.0000 | 0.0000 | 203 | 44 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5861 | 95.4119 | 97.7895 | 64.6446 | 915 | 44 | 929 | 21 | 20 | 95.2381 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5991 | 99.7991 | 99.4000 | 72.8360 | 21855 | 44 | 21701 | 131 | 126 | 96.1832 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9760 | 98.3446 | 99.6155 | 65.8661 | 2614 | 44 | 2591 | 10 | 8 | 80.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 87.8788 | 0.0000 | 0.0000 | 319 | 44 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3143 | 96.0145 | 98.6499 | 82.5698 | 1060 | 44 | 1096 | 15 | 12 | 80.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0491 | 98.9618 | 99.1365 | 81.8417 | 4194 | 44 | 4248 | 37 | 15 | 40.5405 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | homalt | 99.6733 | 99.5134 | 99.8336 | 57.5832 | 8999 | 44 | 8999 | 15 | 13 | 86.6667 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 32.0359 | 80.0905 | 20.0224 | 83.6832 | 177 | 44 | 179 | 715 | 42 | 5.8741 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5612 | 97.7676 | 99.3678 | 76.3607 | 1927 | 44 | 1886 | 12 | 6 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5612 | 97.7676 | 99.3678 | 76.3607 | 1927 | 44 | 1886 | 12 | 6 | 50.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8829 | 98.3619 | 99.4094 | 51.8057 | 2642 | 44 | 2693 | 16 | 3 | 18.7500 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7964 | 99.8426 | 99.7503 | 54.7629 | 27915 | 44 | 27963 | 70 | 23 | 32.8571 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | * | 96.5066 | 96.7883 | 96.2264 | 93.0796 | 1326 | 44 | 1326 | 52 | 4 | 7.6923 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8718 | 99.8265 | 99.9171 | 55.1617 | 25315 | 44 | 25318 | 21 | 16 | 76.1905 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7729 | 96.8794 | 96.6667 | 75.3175 | 1366 | 44 | 1334 | 46 | 39 | 84.7826 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | het | 96.5230 | 96.3606 | 96.6860 | 89.4465 | 1165 | 44 | 1167 | 40 | 4 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7372 | 96.7140 | 98.7823 | 87.5119 | 1295 | 44 | 1298 | 16 | 4 | 25.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7064 | 91.7910 | 97.8131 | 63.8129 | 492 | 44 | 492 | 11 | 9 | 81.8182 | |
| dgrover-gatk | SNP | * | map_l250_m2_e0 | homalt | 99.0440 | 98.3619 | 99.7357 | 86.6145 | 2642 | 44 | 2642 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 54.0000 | 38.0282 | 93.1034 | 47.2727 | 27 | 44 | 27 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 64.6154 | 48.8372 | 95.4545 | 66.4122 | 42 | 44 | 42 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 60.8000 | 46.3415 | 88.3721 | 66.6667 | 38 | 44 | 38 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.2347 | 73.3333 | 79.3750 | 87.3317 | 121 | 44 | 127 | 33 | 10 | 30.3030 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | het | 94.8598 | 94.8538 | 94.8658 | 94.1088 | 811 | 44 | 813 | 44 | 4 | 9.0909 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.1071 | 92.2942 | 95.9927 | 56.4631 | 527 | 44 | 527 | 22 | 15 | 68.1818 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9991 | 98.7265 | 99.2733 | 58.9450 | 3411 | 44 | 3415 | 25 | 14 | 56.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4116 | 99.0616 | 99.7639 | 37.2813 | 4645 | 44 | 4649 | 11 | 5 | 45.4545 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6472 | 93.4150 | 91.8919 | 71.8393 | 610 | 43 | 612 | 54 | 41 | 75.9259 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.7759 | 99.6299 | 99.9223 | 61.7548 | 11577 | 43 | 11577 | 9 | 8 | 88.8889 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5970 | 99.0328 | 96.2023 | 69.6244 | 4403 | 43 | 4357 | 172 | 164 | 95.3488 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.1094 | 98.3822 | 99.8474 | 70.7576 | 2615 | 43 | 2617 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | het | 96.5415 | 94.6914 | 98.4655 | 90.6122 | 767 | 43 | 770 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5099 | 97.8184 | 99.2114 | 76.2576 | 1928 | 43 | 1887 | 15 | 6 | 40.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5099 | 97.8184 | 99.2114 | 76.2576 | 1928 | 43 | 1887 | 15 | 6 | 40.0000 | |
| ckim-vqsr | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9186 | 98.5743 | 99.2654 | 69.9659 | 2973 | 43 | 2973 | 22 | 9 | 40.9091 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6571 | 99.3874 | 99.9283 | 62.5798 | 6976 | 43 | 6972 | 5 | 3 | 60.0000 | |
| ckim-isaac | SNP | ti | * | hetalt | 96.1641 | 92.6117 | 100.0000 | 30.2717 | 539 | 43 | 539 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9558 | 94.9708 | 99.0256 | 50.8383 | 812 | 43 | 813 | 8 | 1 | 12.5000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.5264 | 78.6070 | 86.8571 | 81.0401 | 158 | 43 | 152 | 23 | 4 | 17.3913 | |