PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20851-20900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.1660 | 39.1892 | 65.9574 | 92.3328 | 29 | 45 | 31 | 16 | 5 | 31.2500 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | * | 81.1136 | 75.5435 | 87.5706 | 97.8091 | 139 | 45 | 155 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | * | 81.2198 | 75.6757 | 87.6404 | 97.8476 | 140 | 45 | 156 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 54.9650 | 39.1892 | 92.0000 | 88.1517 | 29 | 45 | 23 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 93.5484 | 20 | 45 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | het | 89.9944 | 98.0794 | 83.1408 | 90.1047 | 2298 | 45 | 2303 | 467 | 194 | 41.5418 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.6612 | 97.3341 | 95.9975 | 47.6081 | 1643 | 45 | 1535 | 64 | 22 | 34.3750 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.5395 | 63.7097 | 84.2105 | 99.9318 | 79 | 45 | 80 | 15 | 12 | 80.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7842 | 98.0306 | 99.5494 | 36.1496 | 2240 | 45 | 2430 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | het | 2.3810 | 4.2553 | 1.6529 | 50.2058 | 2 | 45 | 2 | 119 | 119 | 100.0000 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.1753 | 97.5423 | 92.9204 | 74.8692 | 1786 | 45 | 1785 | 136 | 12 | 8.8235 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | homalt | 98.2992 | 97.1998 | 99.4238 | 87.2438 | 1562 | 45 | 1553 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9002 | 95.4637 | 88.5932 | 82.0967 | 947 | 45 | 932 | 120 | 15 | 12.5000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.6924 | 86.8805 | 99.3377 | 58.4022 | 298 | 45 | 300 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | * | hetalt | 95.4648 | 92.2680 | 98.8909 | 56.0163 | 537 | 45 | 535 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | hetalt | 95.9569 | 92.2280 | 100.0000 | 21.9941 | 534 | 45 | 532 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9388 | 98.5705 | 99.3099 | 68.9036 | 3103 | 45 | 3166 | 22 | 16 | 72.7273 | |
| ckim-gatk | INDEL | I16_PLUS | * | het | 98.3735 | 98.3444 | 98.4027 | 76.2086 | 2673 | 45 | 2649 | 43 | 10 | 23.2558 | |
| ckim-dragen | INDEL | I16_PLUS | * | het | 98.7584 | 98.3444 | 99.1760 | 75.9243 | 2673 | 45 | 2648 | 22 | 6 | 27.2727 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | homalt | 99.6739 | 99.5116 | 99.8367 | 60.2338 | 9169 | 45 | 9169 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | homalt | 99.6770 | 99.5162 | 99.8382 | 60.2316 | 9257 | 45 | 9257 | 15 | 13 | 86.6667 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5405 | 99.5949 | 99.4862 | 63.6798 | 11063 | 45 | 11037 | 57 | 16 | 28.0702 | |
| ckim-gatk | INDEL | * | map_siren | het | 97.5443 | 99.0018 | 96.1290 | 86.6172 | 4463 | 45 | 4470 | 180 | 15 | 8.3333 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 39.3162 | 33.8235 | 46.9388 | 96.7399 | 23 | 45 | 23 | 26 | 20 | 76.9231 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 4.2553 | 0.0000 | 0.0000 | 2 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 25.8065 | 15.0943 | 88.8889 | 83.3333 | 8 | 45 | 8 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 6.2500 | 0.0000 | 0.0000 | 3 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 35.8974 | 23.7288 | 73.6842 | 90.0524 | 14 | 45 | 14 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | segdup | het | 58.0153 | 45.7831 | 79.1667 | 89.8520 | 38 | 45 | 38 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| dgrover-gatk | SNP | * | segdup | * | 99.6727 | 99.8397 | 99.5063 | 90.5121 | 28022 | 45 | 28016 | 139 | 12 | 8.6331 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.5582 | 99.2521 | 99.8662 | 67.1591 | 5972 | 45 | 5972 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | * | 97.3109 | 97.1209 | 97.5016 | 98.2621 | 1518 | 45 | 1522 | 39 | 11 | 28.2051 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9833 | 96.5224 | 99.4891 | 37.1848 | 1249 | 45 | 1363 | 7 | 7 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3317 | 95.2681 | 97.4194 | 82.1360 | 906 | 45 | 906 | 24 | 19 | 79.1667 | |