PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20701-20750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | * | 89.1165 | 82.1705 | 97.3451 | 85.2480 | 212 | 46 | 220 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | homalt | 98.9560 | 98.1324 | 99.7936 | 88.2570 | 2417 | 46 | 2417 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0894 | 97.2749 | 98.9176 | 66.3428 | 1642 | 46 | 1645 | 18 | 16 | 88.8889 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.6918 | 90.6694 | 88.7352 | 58.9619 | 447 | 46 | 449 | 57 | 36 | 63.1579 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | het | 22.7477 | 94.6262 | 12.9278 | 37.5915 | 810 | 46 | 816 | 5496 | 5446 | 99.0902 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.6662 | 86.5889 | 99.6610 | 43.1599 | 297 | 46 | 294 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 38.3912 | 24.5902 | 87.5000 | 85.5856 | 15 | 46 | 14 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4518 | 90.7445 | 98.4749 | 72.4655 | 451 | 46 | 452 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6425 | 98.1293 | 99.1611 | 76.9773 | 2413 | 46 | 2364 | 20 | 11 | 55.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9505 | 98.4748 | 99.4309 | 69.9164 | 2970 | 46 | 2970 | 17 | 4 | 23.5294 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3904 | 99.2623 | 99.5188 | 66.4857 | 6190 | 46 | 6205 | 30 | 5 | 16.6667 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4211 | 99.0527 | 99.7923 | 61.9326 | 4810 | 46 | 4804 | 10 | 2 | 20.0000 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | homalt | 99.7551 | 99.5835 | 99.9273 | 62.3216 | 10999 | 46 | 10999 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | homalt | 99.8403 | 99.7332 | 99.9477 | 52.3546 | 17194 | 46 | 17191 | 9 | 9 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 50.2457 | 51.5789 | 48.9796 | 83.9344 | 49 | 46 | 48 | 50 | 49 | 98.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.6683 | 93.9869 | 87.5761 | 95.2078 | 719 | 46 | 719 | 102 | 12 | 11.7647 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4003 | 99.3113 | 99.4894 | 56.4059 | 6633 | 46 | 6625 | 34 | 32 | 94.1176 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6860 | 91.4179 | 98.1964 | 63.3358 | 490 | 46 | 490 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | het | 96.2282 | 94.6262 | 97.8854 | 30.8078 | 810 | 46 | 9860 | 213 | 202 | 94.8357 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.0437 | 97.4877 | 78.6210 | 66.4142 | 1785 | 46 | 1813 | 493 | 9 | 1.8256 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | * | 97.0671 | 97.2002 | 96.9344 | 67.2029 | 1597 | 46 | 1581 | 50 | 37 | 74.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 4.1667 | 0.0000 | 0.0000 | 2 | 46 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.3846 | 71.4286 | 23.5174 | 34.4504 | 115 | 46 | 115 | 374 | 359 | 95.9893 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 63.7616 | 64.8855 | 62.6761 | 90.4313 | 85 | 46 | 89 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | het | 10.7143 | 6.1224 | 42.8571 | 96.1957 | 3 | 46 | 3 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 37.0370 | 24.5902 | 75.0000 | 90.9910 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3332 | 99.5580 | 99.1095 | 50.6288 | 10361 | 46 | 10350 | 93 | 84 | 90.3226 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8425 | 93.0514 | 98.8062 | 60.2346 | 616 | 46 | 1407 | 17 | 12 | 70.5882 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.9299 | 98.8905 | 98.9693 | 81.5684 | 4100 | 46 | 4129 | 43 | 11 | 25.5814 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0122 | 93.7922 | 96.2644 | 75.4150 | 695 | 46 | 670 | 26 | 21 | 80.7692 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6261 | 95.2133 | 90.1758 | 75.1797 | 915 | 46 | 872 | 95 | 85 | 89.4737 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.2622 | 98.0574 | 88.9141 | 86.8298 | 2322 | 46 | 2350 | 293 | 14 | 4.7782 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.3553 | 99.7468 | 97.0021 | 67.1820 | 18120 | 46 | 18120 | 560 | 541 | 96.6071 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.3553 | 99.7468 | 97.0021 | 67.1820 | 18120 | 46 | 18120 | 560 | 541 | 96.6071 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9433 | 96.4451 | 99.4887 | 36.9705 | 1248 | 46 | 1362 | 7 | 7 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.4123 | 91.4179 | 97.6096 | 63.6495 | 490 | 46 | 490 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.5306 | 93.3042 | 97.8659 | 82.3181 | 641 | 46 | 642 | 14 | 11 | 78.5714 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4306 | 99.8701 | 98.9950 | 61.8984 | 35373 | 46 | 35362 | 359 | 20 | 5.5710 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3909 | 99.0035 | 99.7815 | 31.9351 | 4570 | 46 | 4566 | 10 | 2 | 20.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | het | 96.7528 | 96.9456 | 96.5608 | 92.4896 | 1460 | 46 | 1460 | 52 | 1 | 1.9231 | |
| raldana-dualsentieon | SNP | * | segdup | het | 99.4013 | 99.7344 | 99.0704 | 90.7424 | 17271 | 46 | 17265 | 162 | 1 | 0.6173 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | * | 98.8981 | 98.4692 | 99.3307 | 78.4555 | 2959 | 46 | 2968 | 20 | 3 | 15.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2989 | 98.9290 | 99.6716 | 45.6458 | 4249 | 46 | 4249 | 14 | 0 | 0.0000 | |