PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20251-20300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8260 | 99.7054 | 99.9469 | 65.8244 | 16925 | 50 | 16925 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.4016 | 94.7971 | 79.3722 | 71.2035 | 911 | 50 | 885 | 230 | 217 | 94.3478 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | het | 97.9824 | 98.2413 | 97.7249 | 78.7694 | 2793 | 50 | 2792 | 65 | 38 | 58.4615 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | homalt | 99.2485 | 98.7329 | 99.7695 | 71.6659 | 3896 | 50 | 3896 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | homalt | 99.2738 | 98.7754 | 99.7773 | 74.0315 | 4033 | 50 | 4033 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | homalt | 99.2828 | 98.7905 | 99.7801 | 74.0325 | 4084 | 50 | 4084 | 9 | 9 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4900 | 97.9500 | 77.4308 | 59.1746 | 2389 | 50 | 2405 | 701 | 19 | 2.7104 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | het | 95.7173 | 96.4055 | 95.0390 | 90.2021 | 1341 | 50 | 1341 | 70 | 7 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | het | 95.7012 | 96.4489 | 94.9650 | 90.2767 | 1358 | 50 | 1358 | 72 | 8 | 11.1111 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | * | 96.2243 | 96.2631 | 96.1855 | 90.5619 | 1288 | 50 | 1286 | 51 | 9 | 17.6471 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | * | 96.3093 | 96.4489 | 96.1702 | 91.3225 | 1358 | 50 | 1356 | 54 | 9 | 16.6667 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | * | 97.1576 | 96.1803 | 98.1550 | 66.7729 | 1259 | 50 | 1330 | 25 | 18 | 72.0000 | |
| cchapple-custom | SNP | * | segdup | * | 99.5856 | 99.8219 | 99.3504 | 91.8828 | 28017 | 50 | 27988 | 183 | 25 | 13.6612 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7571 | 99.7248 | 97.8080 | 67.5218 | 18116 | 50 | 18116 | 406 | 393 | 96.7980 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7571 | 99.7248 | 97.8080 | 67.5218 | 18116 | 50 | 18116 | 406 | 393 | 96.7980 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 64.0842 | 58.6777 | 70.5882 | 97.7293 | 71 | 50 | 72 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.7553 | 24.2424 | 55.5556 | 91.2903 | 16 | 50 | 15 | 12 | 2 | 16.6667 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1690 | 98.9505 | 99.3886 | 67.1606 | 4714 | 50 | 4714 | 29 | 10 | 34.4828 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7369 | 99.5048 | 99.9701 | 61.6836 | 10047 | 50 | 10047 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5118 | 70.0599 | 91.9118 | 65.9148 | 117 | 50 | 125 | 11 | 10 | 90.9091 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8383 | 99.8028 | 99.8737 | 55.5058 | 25309 | 50 | 25307 | 32 | 17 | 53.1250 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | SNP | * | segdup | * | 98.4991 | 99.8219 | 97.2109 | 92.1838 | 28017 | 50 | 28022 | 804 | 14 | 1.7413 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.6513 | 93.6387 | 99.8643 | 55.3874 | 736 | 50 | 736 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6735 | 92.3896 | 97.0732 | 71.9306 | 607 | 50 | 597 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2135 | 97.8118 | 98.6185 | 35.4245 | 2235 | 50 | 2213 | 31 | 21 | 67.7419 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 31.1996 | 1280 | 50 | 1279 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | het | 70.1405 | 54.9550 | 96.9231 | 97.0865 | 61 | 50 | 63 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | homalt | 71.1111 | 56.1404 | 96.9697 | 81.1429 | 64 | 50 | 64 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.5024 | 95.8159 | 99.2494 | 33.8300 | 1145 | 50 | 1190 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | * | map_siren | het | 98.8042 | 98.8909 | 98.7177 | 84.1153 | 4458 | 50 | 4465 | 58 | 7 | 12.0690 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6941 | 98.1189 | 99.2762 | 66.9104 | 2608 | 50 | 2606 | 19 | 14 | 73.6842 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6677 | 99.5048 | 99.8311 | 60.3522 | 10047 | 50 | 10048 | 17 | 14 | 82.3529 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.4183 | 93.3511 | 95.5102 | 59.6597 | 702 | 50 | 702 | 33 | 22 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.3098 | 64.7887 | 76.8595 | 44.7489 | 92 | 50 | 93 | 28 | 26 | 92.8571 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | * | 91.4556 | 90.1768 | 92.7711 | 83.2942 | 459 | 50 | 462 | 36 | 21 | 58.3333 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5978 | 99.3202 | 99.8769 | 36.6057 | 7305 | 50 | 7301 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8234 | 96.2133 | 99.4883 | 36.4312 | 1245 | 49 | 1361 | 7 | 7 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3603 | 99.2881 | 99.4326 | 81.7523 | 6834 | 49 | 6834 | 39 | 15 | 38.4615 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5458 | 99.2722 | 99.8208 | 49.8653 | 6684 | 49 | 6686 | 12 | 7 | 58.3333 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | * | 96.7114 | 96.8650 | 96.5583 | 90.6490 | 1514 | 49 | 1515 | 54 | 7 | 12.9630 | |
| dgrover-gatk | SNP | * | HG002compoundhet | * | 99.8063 | 99.8102 | 99.8025 | 41.2435 | 25773 | 49 | 25766 | 51 | 36 | 70.5882 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.8877 | 86.3510 | 79.6915 | 44.5869 | 310 | 49 | 310 | 79 | 52 | 65.8228 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | * | 98.0153 | 97.7687 | 98.2633 | 98.2577 | 2147 | 49 | 2150 | 38 | 14 | 36.8421 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.3400 | 98.7394 | 99.9479 | 59.7020 | 3838 | 49 | 3838 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | homalt | 94.8575 | 96.1749 | 93.5757 | 84.5669 | 1232 | 49 | 1879 | 129 | 113 | 87.5969 | |