PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20051-20100 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.1086 | 93.1759 | 97.1233 | 60.7948 | 710 | 52 | 709 | 21 | 17 | 80.9524 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0708 | 98.8304 | 99.3124 | 59.5757 | 4394 | 52 | 4333 | 30 | 22 | 73.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0716 | 98.5896 | 99.5583 | 44.7023 | 3635 | 52 | 3606 | 16 | 8 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.7766 | 78.8618 | 98.9637 | 70.5793 | 194 | 52 | 191 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6086 | 92.9919 | 94.2335 | 70.5102 | 690 | 52 | 670 | 41 | 20 | 48.7805 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 73.3215 | 58.4000 | 98.4848 | 34.0000 | 73 | 52 | 65 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | * | 97.7659 | 97.5320 | 98.0010 | 98.2503 | 2055 | 52 | 2059 | 42 | 15 | 35.7143 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.7211 | 90.1328 | 87.3529 | 74.4841 | 475 | 52 | 594 | 86 | 81 | 94.1860 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6927 | 97.2846 | 98.1043 | 82.7144 | 1863 | 52 | 1863 | 36 | 17 | 47.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 97.6961 | 97.3182 | 98.0769 | 82.8076 | 1887 | 52 | 1887 | 37 | 17 | 45.9459 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6365 | 97.2403 | 98.0360 | 81.9551 | 1797 | 51 | 1797 | 36 | 17 | 47.2222 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.7774 | 93.1267 | 90.4666 | 45.7994 | 691 | 51 | 4033 | 425 | 374 | 88.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2925 | 95.9395 | 98.6842 | 76.0063 | 1205 | 51 | 1200 | 16 | 7 | 43.7500 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 81.3204 | 72.2826 | 92.9412 | 97.5589 | 133 | 51 | 158 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 81.4309 | 72.4324 | 92.9825 | 97.5939 | 134 | 51 | 159 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3151 | 97.0053 | 97.6268 | 51.2109 | 1652 | 51 | 5389 | 131 | 84 | 64.1221 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8737 | 70.8571 | 96.9466 | 64.3052 | 124 | 51 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9735 | 92.2961 | 93.6609 | 72.5054 | 611 | 51 | 591 | 40 | 14 | 35.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2214 | 99.5485 | 98.8965 | 52.5869 | 11245 | 51 | 19268 | 215 | 45 | 20.9302 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7370 | 99.4951 | 99.9801 | 43.3493 | 10051 | 51 | 10045 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.1297 | 97.6301 | 96.6344 | 45.5436 | 2101 | 51 | 2096 | 73 | 71 | 97.2603 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.2770 | 90.3226 | 75.5474 | 70.8511 | 476 | 51 | 414 | 134 | 133 | 99.2537 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.6633 | 97.6712 | 99.6756 | 43.8460 | 2139 | 51 | 2151 | 7 | 6 | 85.7143 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | homalt | 99.7457 | 99.5611 | 99.9309 | 58.9350 | 11569 | 51 | 11567 | 8 | 6 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8587 | 99.7475 | 99.9702 | 56.3085 | 20148 | 51 | 20148 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | * | segdup | * | 98.4487 | 98.0047 | 98.8968 | 98.3850 | 2505 | 51 | 2510 | 28 | 10 | 35.7143 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.1659 | 95.8604 | 98.5075 | 61.5311 | 1181 | 51 | 1188 | 18 | 14 | 77.7778 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0021 | 98.8951 | 99.1093 | 37.8896 | 4565 | 51 | 4562 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0782 | 98.7966 | 99.3614 | 79.3181 | 4187 | 51 | 4201 | 27 | 8 | 29.6296 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8791 | 98.9123 | 96.8672 | 42.4242 | 4638 | 51 | 4638 | 150 | 2 | 1.3333 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8531 | 99.8195 | 99.8867 | 58.0732 | 28209 | 51 | 28212 | 32 | 20 | 62.5000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | * | 98.3429 | 98.6422 | 98.0454 | 86.0496 | 3705 | 51 | 3712 | 74 | 17 | 22.9730 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | * | 99.8063 | 99.8025 | 99.8102 | 41.0420 | 25771 | 51 | 25764 | 49 | 25 | 51.0204 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | * | 98.5526 | 98.8862 | 98.2213 | 89.0457 | 4528 | 51 | 4528 | 82 | 19 | 23.1707 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | * | 98.6664 | 98.9816 | 98.3532 | 89.5470 | 4957 | 51 | 4957 | 83 | 19 | 22.8916 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8517 | 99.4416 | 98.2688 | 76.2612 | 9082 | 51 | 9082 | 160 | 11 | 6.8750 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8517 | 99.4416 | 98.2688 | 76.2612 | 9082 | 51 | 9082 | 160 | 11 | 6.8750 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.6369 | 75.2427 | 99.3631 | 51.2422 | 155 | 51 | 156 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2041 | 99.7097 | 98.7036 | 65.3598 | 17517 | 51 | 17512 | 230 | 14 | 6.0870 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4291 | 98.7026 | 98.1570 | 66.1366 | 3880 | 51 | 3888 | 73 | 1 | 1.3699 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | homalt | 99.8005 | 99.7214 | 99.8796 | 61.9278 | 18258 | 51 | 18258 | 22 | 22 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | homalt | 99.8025 | 99.7242 | 99.8809 | 61.9106 | 18443 | 51 | 18443 | 22 | 22 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | homalt | 96.0216 | 93.3159 | 98.8889 | 83.3218 | 712 | 51 | 712 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 51 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 94.3765 | 95.7816 | 93.0120 | 85.5736 | 1158 | 51 | 1158 | 87 | 61 | 70.1149 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||