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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 383 384 385 386 387 388 389 390 391 ... 1720 1721 » 19301-19350 / 86044 show all
rpoplin-dv42	SNP	ti	map_l250_m2_e0	het	98.3531	98.1868	98.5199	88.5673	3195	59	3195	48	29	60.4167
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.9131	95.6458	96.1820	79.8889	1296	59	1184	47	40	85.1064
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.2638	96.1738	96.3539	73.1963	1483	59	1797	68	52	76.4706
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.0000	50.0000	71.4286	0	59	2	2	2	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.1197	61.4379	45.2558	24.9536	94	59	1097	1327	1322	99.6232
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	68.1726	72.6852	64.1876	28.7853	157	59	794	443	440	99.3228
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	44.0199	83.7017	29.8625	62.4216	303	59	304	714	698	97.7591
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	75.6619	66.8539	87.1429	65.7702	119	59	122	18	18	100.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	78.4383	93.0670	67.7838	87.7240	792	59	627	298	27	9.0604
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5570	99.4777	99.6364	55.6678	11237	59	11234	41	40	97.5610
gduggal-bwaplat	INDEL	I16_PLUS	map_siren	*	46.9565	31.3953	93.1034	90.6149	27	59	27	2	2	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.3333	66.8539	97.5410	81.8452	119	59	119	3	1	33.3333
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	44.4444	28.9157	96.0000	59.6774	24	59	24	1	1	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	95.1505	98.5769	91.9543	85.8273	4087	59	4103	359	47	13.0919
gduggal-bwafb	SNP	tv	map_l100_m2_e0	homalt	99.6083	99.3597	99.8582	65.9435	9155	59	9155	13	7	53.8462
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0156	88.8679	99.7963	48.3158	471	59	490	1	1	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000
dgrover-gatk	SNP	ti	map_l150_m2_e0	homalt	99.5587	99.2253	99.8942	70.9853	7557	59	7557	8	6	75.0000
dgrover-gatk	SNP	ti	map_l150_m2_e1	homalt	99.5631	99.2331	99.8953	71.0135	7634	59	7634	8	6	75.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	90.2020	86.7117	93.9850	69.4253	385	59	375	24	5	20.8333
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	92.9688	92.3674	93.5780	71.2618	714	59	714	49	29	59.1837
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3708	98.3432	98.3984	72.3852	3502	59	3502	57	45	78.9474
ckim-vqsr	INDEL	D1_5	map_l100_m2_e0	*	97.3274	96.9191	97.7392	88.6597	1856	59	1859	43	6	13.9535
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	52.8000	35.8696	100.0000	62.5000	33	59	33	0	0
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	44.0143	35.8696	56.9444	58.6207	33	59	41	31	27	87.0968
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4064	99.1978	99.6159	41.7997	7296	59	7261	28	6	21.4286
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2643	98.8474	99.6847	73.5302	5060	59	5058	16	12	75.0000
raldana-dualsentieon	INDEL	*	map_l125_m1_e0	*	97.7814	97.1998	98.3701	84.9452	2048	59	2052	34	6	17.6471
qzeng-custom	INDEL	D1_5	map_l150_m2_e0	homalt	85.4395	75.6198	98.1900	87.8035	183	59	217	4	4	100.0000
qzeng-custom	INDEL	D1_5	map_l150_m2_e1	homalt	85.8330	76.2097	98.2379	87.7562	189	59	223	4	4	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.8382	95.5706	94.1169	36.5552	1273	59	7679	480	470	97.9167
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	homalt	99.8049	99.6715	99.9386	57.1476	17901	59	17900	11	11	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
ltrigg-rtg2	SNP	ti	segdup	*	99.2028	99.6980	98.7126	86.7471	19478	59	19475	254	32	12.5984
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	96.9438	95.5133	98.4177	45.4467	1256	59	1244	20	12	60.0000
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
hfeng-pmm2	SNP	tv	map_l100_m0_e0	het	98.8749	99.1831	98.5687	74.1359	7163	59	7162	104	11	10.5769
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.2134	84.7150	98.7915	90.8715	327	59	327	4	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4783	99.1237	99.8355	46.7341	6674	59	6676	11	5	45.4545
hfeng-pmm2	INDEL	*	map_l100_m2_e1	*	98.3131	98.4292	98.1972	85.3384	3697	59	3704	68	13	19.1176
hfeng-pmm3	SNP	tv	map_l125_m0_e0	*	99.1700	99.1102	99.2298	75.2152	6572	59	6571	51	7	13.7255
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655

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