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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 379 380 381 382 383 384 385 386 387 ... 1720 1721 » 19101-19150 / 86044 show all
gduggal-bwaplat	SNP	*	HG002compoundhet	hetalt	96.3319	92.9234	100.0000	22.7493	801	61	798	0	0
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	59.7926	44.5455	90.9091	96.3211	49	61	50	5	4	80.0000
gduggal-bwaplat	SNP	tv	HG002compoundhet	hetalt	96.3319	92.9234	100.0000	22.7493	801	61	798	0	0
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	78.4884	95.1433	66.7958	80.7253	1195	61	1207	600	372	62.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.2945	99.0956	99.4942	40.3814	6684	61	6688	34	20	58.8235
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.5418	98.5606	89.0094	85.1964	4177	61	4187	517	55	10.6383
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-bwavard	INDEL	I6_15	segdup	*	68.6994	65.1429	72.6667	92.8605	114	61	109	41	40	97.5610
gduggal-snapfb	INDEL	*	map_l100_m1_e0	homalt	96.6439	95.0285	98.3151	86.5465	1166	61	1167	20	12	60.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	het	96.4922	98.6946	94.3859	59.0165	4612	61	4657	277	52	18.7726
gduggal-bwavard	INDEL	D1_5	map_siren	homalt	97.1880	94.7774	99.7245	70.3593	1107	61	1086	3	3	100.0000
ndellapenna-hhga	SNP	*	map_l150_m1_e0	homalt	99.6799	99.4589	99.9020	69.8014	11212	61	11212	11	10	90.9091
ndellapenna-hhga	SNP	*	map_l150_m2_e0	homalt	99.6916	99.4786	99.9056	72.3853	11638	61	11638	11	10	90.9091
ndellapenna-hhga	SNP	*	map_l150_m2_e1	homalt	99.6950	99.4842	99.9066	72.4121	11766	61	11766	11	10	90.9091
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3331	98.7166	99.9574	29.1176	4692	61	4689	2	2	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	90.8850	85.2657	97.2973	66.0239	353	61	360	10	10	100.0000
ltrigg-rtg2	INDEL	I6_15	HG002complexvar	het	98.2137	97.4098	99.0310	49.5355	2294	61	2044	20	9	45.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.5049	92.7033	98.4810	62.0192	775	61	778	12	8	66.6667
qzeng-custom	INDEL	D1_5	map_l100_m0_e0	homalt	86.1563	76.3566	98.8417	82.7793	197	61	256	3	3	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	54.1353	37.1134	100.0000	32.0755	36	61	36	0	0
mlin-fermikit	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	84.8660	86.0092	83.7529	81.8446	375	61	366	71	69	97.1831
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.1375	97.9385	98.3373	54.7451	2898	61	2898	49	23	46.9388
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.0952	98.5606	95.6726	86.1499	4177	61	4267	193	28	14.5078
raldana-dualsentieon	INDEL	*	map_l125_m2_e0	*	97.8027	97.2222	98.3901	85.9597	2135	61	2139	35	6	17.1429
ndellapenna-hhga	INDEL	D1_5	map_siren	*	98.3828	98.2715	98.4943	79.4152	3468	61	3467	53	28	52.8302
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	86.0038	78.1362	95.6332	65.1976	218	61	219	10	9	90.0000
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.7613	96.7656	96.7570	71.4697	1825	61	1820	61	57	93.4426
mlin-fermikit	INDEL	D16_PLUS	HG002compoundhet	het	55.6184	84.9383	41.3462	47.6949	344	61	258	366	363	99.1803
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
cchapple-custom	INDEL	*	map_l100_m0_e0	*	95.2252	96.0972	94.3688	85.7659	1502	61	1525	91	22	24.1758
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.8037	88.4906	99.7955	45.1178	469	61	488	1	1	100.0000
ciseli-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	63.5187	93.8508	48.0041	71.9172	931	61	938	1016	8	0.7874
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5579	99.4508	99.6651	63.3945	11047	61	11012	37	16	43.2432
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.6681	97.1707	98.1707	76.7832	2095	61	2093	39	20	51.2821
ckim-gatk	INDEL	*	map_l100_m2_e1	*	97.0874	98.3759	95.8323	89.0990	3695	61	3702	161	20	12.4224
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	11.5942	0.0000	0.0000	8	61	0	0	0
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	61	0	0	0
ghariani-varprowl	INDEL	*	HG002compoundhet	homalt	33.4304	91.1079	20.4709	62.9558	625	61	626	2432	2127	87.4589
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	0.0000	0.0000	50.0000	71.4286	0	61	1	1	1	100.0000
gduggal-snapvard	SNP	*	func_cds	homalt	99.5466	99.1259	99.9709	21.8523	6918	61	6875	2	2	100.0000
gduggal-snapvard	INDEL	*	map_l150_m2_e0	homalt	92.6163	87.3181	98.5989	84.8461	420	61	563	8	6	75.0000
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-snapplat	INDEL	I1_5	map_l125_m1_e0	homalt	87.6815	81.3456	95.0877	89.5871	266	61	271	14	0	0.0000
gduggal-snapplat	INDEL	I6_15	segdup	het	37.0075	26.5060	61.2903	95.4210	22	61	19	12	1	8.3333
gduggal-snapfb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.9406	86.2302	91.8269	26.6314	382	61	382	34	33	97.0588
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	77.8072	93.6126	66.5680	74.1046	894	61	900	452	50	11.0619

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