PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18601-18650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | * | 98.1178 | 97.6752 | 98.5644 | 88.1773 | 2815 | 67 | 2815 | 41 | 3 | 7.3171 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | * | 98.1230 | 97.7023 | 98.5472 | 88.2575 | 2849 | 67 | 2849 | 42 | 3 | 7.1429 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7585 | 97.9680 | 99.5620 | 62.6286 | 3182 | 66 | 3182 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | * | 98.0065 | 97.5066 | 98.5115 | 87.3534 | 2581 | 66 | 2581 | 39 | 3 | 7.6923 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | het | 81.6272 | 92.2353 | 73.2075 | 84.1151 | 784 | 66 | 776 | 284 | 279 | 98.2394 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.1992 | 56.8627 | 98.8636 | 64.0816 | 87 | 66 | 87 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | het | 92.5346 | 98.5876 | 87.1819 | 61.1401 | 4607 | 66 | 1884 | 277 | 44 | 15.8845 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | * | 96.4133 | 95.3125 | 97.5398 | 89.5080 | 1342 | 66 | 1348 | 34 | 8 | 23.5294 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 34.0000 | 20.4819 | 100.0000 | 32.0000 | 17 | 66 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.3227 | 56.8627 | 88.7755 | 86.4454 | 87 | 66 | 87 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.7774 | 89.1980 | 26.4300 | 49.8268 | 545 | 66 | 536 | 1492 | 1475 | 98.8606 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | het | 57.6923 | 40.5405 | 100.0000 | 98.9752 | 45 | 66 | 45 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9969 | 94.8995 | 99.1890 | 42.3293 | 1228 | 66 | 1223 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9195 | 98.2099 | 99.6395 | 45.6518 | 3621 | 66 | 3593 | 13 | 7 | 53.8462 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.9504 | 91.0204 | 94.9640 | 50.7442 | 669 | 66 | 660 | 35 | 34 | 97.1429 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1608 | 98.9184 | 99.4045 | 76.5307 | 6036 | 66 | 6009 | 36 | 20 | 55.5556 | |
| jli-custom | INDEL | I6_15 | HG002complexvar | het | 98.4497 | 97.1975 | 99.7346 | 57.2913 | 2289 | 66 | 2255 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 17.9562 | 55.4054 | 10.7143 | 41.9355 | 82 | 66 | 81 | 675 | 674 | 99.8519 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.1155 | 94.7826 | 84.0878 | 89.9821 | 1199 | 66 | 1226 | 232 | 79 | 34.0517 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7289 | 93.1818 | 96.3283 | 76.7629 | 902 | 66 | 892 | 34 | 8 | 23.5294 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5066 | 94.4770 | 98.6254 | 46.6789 | 1129 | 66 | 1148 | 16 | 15 | 93.7500 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9945 | 94.1645 | 100.0000 | 38.4968 | 1065 | 66 | 1072 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | segdup | het | 98.2022 | 99.4514 | 96.9839 | 94.5092 | 11964 | 66 | 11962 | 372 | 2 | 0.5376 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | het | 92.1590 | 92.8571 | 91.4712 | 91.9353 | 858 | 66 | 858 | 80 | 51 | 63.7500 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8419 | 99.1062 | 98.5790 | 59.3072 | 7318 | 66 | 7284 | 105 | 100 | 95.2381 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8690 | 98.8710 | 96.8872 | 72.0428 | 5780 | 66 | 5727 | 184 | 169 | 91.8478 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8690 | 98.8710 | 96.8872 | 72.0428 | 5780 | 66 | 5727 | 184 | 169 | 91.8478 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.9023 | 98.2941 | 95.5493 | 68.7291 | 3803 | 66 | 3757 | 175 | 166 | 94.8571 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2278 | 94.9810 | 97.5078 | 52.7941 | 1249 | 66 | 1252 | 32 | 24 | 75.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.9874 | 90.0901 | 98.2372 | 88.6401 | 600 | 66 | 613 | 11 | 6 | 54.5455 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.9874 | 90.0901 | 98.2372 | 88.6401 | 600 | 66 | 613 | 11 | 6 | 54.5455 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.6538 | 99.5092 | 99.7987 | 52.7938 | 13382 | 66 | 13389 | 27 | 26 | 96.2963 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2631 | 87.6866 | 95.1439 | 62.7595 | 470 | 66 | 529 | 27 | 23 | 85.1852 | |
| anovak-vg | INDEL | * | segdup | homalt | 76.7205 | 93.1250 | 65.2299 | 92.3073 | 894 | 66 | 908 | 484 | 445 | 91.9421 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0534 | 94.5409 | 97.6150 | 85.1242 | 1143 | 66 | 1146 | 28 | 4 | 14.2857 | |
| bgallagher-sentieon | SNP | * | map_l100_m0_e0 | homalt | 99.6507 | 99.4320 | 99.8703 | 60.0283 | 11554 | 66 | 11554 | 15 | 11 | 73.3333 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | het | 99.1089 | 99.5719 | 98.6501 | 70.0769 | 15351 | 66 | 15347 | 210 | 25 | 11.9048 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | het | 99.1197 | 99.5817 | 98.6621 | 71.4019 | 15711 | 66 | 15707 | 213 | 25 | 11.7371 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | het | 99.1255 | 99.5859 | 98.6693 | 71.4407 | 15872 | 66 | 15868 | 214 | 25 | 11.6822 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.6541 | 92.2535 | 81.6956 | 79.2980 | 786 | 66 | 848 | 190 | 161 | 84.7368 | |
| astatham-gatk | INDEL | * | HG002compoundhet | het | 93.2853 | 98.3879 | 88.6859 | 79.4067 | 4028 | 66 | 3786 | 483 | 475 | 98.3437 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | het | 92.6752 | 98.3879 | 87.5896 | 79.6233 | 4028 | 66 | 3790 | 537 | 528 | 98.3240 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.1411 | 91.0204 | 91.2621 | 58.1544 | 669 | 66 | 658 | 63 | 61 | 96.8254 | |
| bgallagher-sentieon | INDEL | D6_15 | * | het | 98.7535 | 99.4306 | 98.0855 | 62.6961 | 11526 | 66 | 11476 | 224 | 188 | 83.9286 | |