PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18401-18450 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 46.1538 | 39.4737 | 55.5556 | 97.4782 | 45 | 69 | 45 | 36 | 27 | 75.0000 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | homalt | 99.4457 | 99.1031 | 99.7907 | 67.9320 | 7624 | 69 | 7629 | 16 | 15 | 93.7500 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6801 | 99.7532 | 99.6071 | 56.0538 | 27890 | 69 | 27889 | 110 | 11 | 10.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8310 | 87.1028 | 99.3658 | 71.0526 | 466 | 69 | 470 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4821 | 96.0069 | 99.0033 | 65.2258 | 1659 | 69 | 12417 | 125 | 120 | 96.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3978 | 94.1426 | 96.6870 | 72.1399 | 1109 | 69 | 1109 | 38 | 29 | 76.3158 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3478 | 99.3571 | 99.3386 | 42.1628 | 10663 | 69 | 10663 | 71 | 1 | 1.4085 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8288 | 94.8353 | 98.9080 | 47.7162 | 1267 | 69 | 1268 | 14 | 7 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 94.7256 | 93.1885 | 96.3143 | 48.2949 | 944 | 69 | 993 | 38 | 37 | 97.3684 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | * | 35.8056 | 23.3333 | 76.9231 | 92.6346 | 21 | 69 | 20 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | het | 60.9393 | 45.2381 | 93.3333 | 89.3993 | 57 | 69 | 56 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8084 | 91.7464 | 98.0818 | 67.8189 | 767 | 69 | 767 | 15 | 13 | 86.6667 | |
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.6414 | 99.3753 | 99.9090 | 63.5537 | 10976 | 69 | 10976 | 10 | 8 | 80.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4782 | 96.3415 | 98.6420 | 70.2969 | 1817 | 69 | 1816 | 25 | 18 | 72.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | * | 97.9798 | 97.6058 | 98.3566 | 87.5544 | 2813 | 69 | 2813 | 47 | 31 | 65.9574 | |
| rpoplin-dv42 | SNP | tv | map_siren | homalt | 99.7328 | 99.5998 | 99.8662 | 55.9755 | 17171 | 69 | 17169 | 23 | 21 | 91.3043 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.0096 | 95.7223 | 96.2986 | 71.4542 | 1544 | 69 | 1535 | 59 | 56 | 94.9153 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | homalt | 99.3702 | 99.0583 | 99.6841 | 71.0853 | 7258 | 69 | 7258 | 23 | 22 | 95.6522 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | het | 95.8589 | 93.7669 | 98.0464 | 66.4344 | 1038 | 69 | 803 | 16 | 11 | 68.7500 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3114 | 96.4304 | 98.2086 | 62.1384 | 1864 | 69 | 1864 | 34 | 34 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9842 | 99.2753 | 98.6948 | 48.1764 | 9452 | 69 | 9452 | 125 | 120 | 96.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9869 | 94.2259 | 99.9146 | 34.2135 | 1126 | 69 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | het | 98.4917 | 97.0701 | 99.9556 | 58.8257 | 2286 | 69 | 2250 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8828 | 96.4992 | 99.3067 | 73.9583 | 1902 | 69 | 1862 | 13 | 8 | 61.5385 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8828 | 96.4992 | 99.3067 | 73.9583 | 1902 | 69 | 1862 | 13 | 8 | 61.5385 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4191 | 98.9769 | 99.8654 | 39.1534 | 6675 | 69 | 6675 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4812 | 99.0741 | 99.8917 | 37.3686 | 7383 | 69 | 7380 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | * | 99.4268 | 99.3775 | 99.4762 | 69.0933 | 11015 | 69 | 11014 | 58 | 8 | 13.7931 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4544 | 99.0741 | 99.8377 | 37.0787 | 7383 | 69 | 7380 | 12 | 3 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9545 | 92.8719 | 97.1326 | 81.0032 | 899 | 69 | 813 | 24 | 17 | 70.8333 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.6081 | 97.5009 | 99.7406 | 73.6452 | 2692 | 69 | 2692 | 7 | 6 | 85.7143 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | * | 91.7764 | 97.3933 | 86.7721 | 92.6439 | 2578 | 69 | 2578 | 393 | 24 | 6.1069 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | * | 92.0635 | 97.6058 | 87.1168 | 93.0345 | 2813 | 69 | 2813 | 416 | 24 | 5.7692 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | * | 92.1359 | 97.6337 | 87.2243 | 93.0989 | 2847 | 69 | 2847 | 417 | 24 | 5.7554 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7064 | 94.2259 | 99.3209 | 30.4194 | 1126 | 69 | 1170 | 8 | 7 | 87.5000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6049 | 84.5103 | 100.0000 | 34.8074 | 371 | 68 | 457 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.8247 | 99.2858 | 94.4828 | 49.5258 | 9453 | 68 | 9453 | 552 | 547 | 99.0942 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.1909 | 86.1224 | 49.9033 | 76.4142 | 422 | 68 | 258 | 259 | 240 | 92.6641 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4066 | 99.4274 | 99.3858 | 50.7439 | 11807 | 68 | 11812 | 73 | 23 | 31.5068 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.6034 | 94.8872 | 94.3212 | 81.3996 | 1262 | 68 | 1063 | 64 | 51 | 79.6875 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6049 | 84.5103 | 100.0000 | 35.3276 | 371 | 68 | 454 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | HG002complexvar | hetalt | 97.1405 | 94.4399 | 100.0000 | 56.4346 | 1155 | 68 | 1195 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9744 | 98.1557 | 99.8069 | 48.5309 | 3619 | 68 | 3619 | 7 | 4 | 57.1429 | |