PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18351-18400 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9410 | 77.6358 | 98.7805 | 31.0924 | 243 | 70 | 243 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | * | 49.3151 | 33.9623 | 90.0000 | 92.9701 | 36 | 70 | 36 | 4 | 3 | 75.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8865 | 96.0317 | 89.9408 | 90.7338 | 1694 | 70 | 1824 | 204 | 45 | 22.0588 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.4719 | 85.9184 | 64.1753 | 76.0494 | 421 | 69 | 249 | 139 | 136 | 97.8417 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | hetalt | 61.5385 | 44.8000 | 98.2456 | 86.6822 | 56 | 69 | 56 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | segdup | het | 99.4554 | 99.4264 | 99.4843 | 88.9326 | 11961 | 69 | 11961 | 62 | 2 | 3.2258 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.9082 | 98.0492 | 93.8587 | 69.1405 | 3468 | 69 | 3454 | 226 | 220 | 97.3451 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0340 | 96.7727 | 99.3285 | 36.5490 | 2069 | 69 | 2071 | 14 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002complexvar | * | 96.5513 | 95.8004 | 97.3142 | 67.2463 | 1574 | 69 | 1558 | 43 | 31 | 72.0930 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0772 | 94.5064 | 97.7011 | 85.6419 | 1187 | 69 | 1190 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D6_15 | * | het | 98.7915 | 99.4048 | 98.1857 | 62.8008 | 11523 | 69 | 11473 | 212 | 175 | 82.5472 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 18.8235 | 0.0000 | 0.0000 | 16 | 69 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.6855 | 81.0440 | 95.5128 | 86.5285 | 295 | 69 | 298 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5059 | 95.7223 | 99.3573 | 64.9865 | 1544 | 69 | 1546 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | homalt | 99.8221 | 99.7445 | 99.8999 | 60.0030 | 26934 | 69 | 26933 | 27 | 24 | 88.8889 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.8070 | 15.8537 | 40.6250 | 85.9649 | 13 | 69 | 13 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8116 | 99.6584 | 99.9652 | 56.5451 | 20130 | 69 | 20130 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4506 | 99.7507 | 99.1523 | 64.1117 | 27609 | 69 | 27604 | 236 | 18 | 7.6271 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7395 | 87.1028 | 99.1561 | 70.9914 | 466 | 69 | 470 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 38.3929 | 0.0000 | 0.0000 | 43 | 69 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | het | 83.2432 | 80.0000 | 86.7606 | 94.6220 | 276 | 69 | 308 | 47 | 12 | 25.5319 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | het | 81.1055 | 77.6699 | 84.8592 | 96.0935 | 240 | 69 | 241 | 43 | 1 | 2.3256 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | het | 81.4686 | 78.2334 | 84.9829 | 96.0923 | 248 | 69 | 249 | 44 | 1 | 2.2727 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | het | 84.5335 | 75.3571 | 96.2547 | 69.0972 | 211 | 69 | 257 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.3911 | 89.0476 | 62.4169 | 74.6344 | 561 | 69 | 563 | 339 | 45 | 13.2743 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 67.2129 | 61.2360 | 74.4828 | 76.8000 | 109 | 69 | 108 | 37 | 37 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4138 | 15.8537 | 38.2353 | 86.4000 | 13 | 69 | 13 | 21 | 13 | 61.9048 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7473 | 99.3571 | 94.2711 | 57.1736 | 10663 | 69 | 10696 | 650 | 69 | 10.6154 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.4821 | 91.3098 | 52.2696 | 87.6612 | 725 | 69 | 760 | 694 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | het | 96.3501 | 99.0446 | 93.7983 | 79.0409 | 7153 | 69 | 7154 | 473 | 76 | 16.0677 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9583 | 99.2753 | 98.6433 | 48.3478 | 9452 | 69 | 9452 | 130 | 127 | 97.6923 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.8190 | 98.1137 | 70.1659 | 50.3295 | 3589 | 69 | 3596 | 1529 | 1471 | 96.2067 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.9666 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | * | 84.1360 | 92.1769 | 77.3854 | 90.1890 | 813 | 69 | 1249 | 365 | 97 | 26.5753 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | homalt | 84.4618 | 76.1246 | 94.8498 | 71.9277 | 220 | 69 | 221 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.7165 | 94.9376 | 96.5082 | 74.6707 | 1294 | 69 | 1299 | 47 | 37 | 78.7234 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 59.7518 | 76.0417 | 49.2099 | 69.9253 | 219 | 69 | 218 | 225 | 200 | 88.8889 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.9732 | 95.9483 | 76.2512 | 71.1719 | 1634 | 69 | 1615 | 503 | 405 | 80.5169 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | homalt | 96.9037 | 94.3069 | 99.6476 | 66.3105 | 1143 | 69 | 1131 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 69 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_siren | homalt | 99.8931 | 99.8749 | 99.9112 | 54.6593 | 55087 | 69 | 52905 | 47 | 25 | 53.1915 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | * | 96.5933 | 96.8989 | 96.2897 | 89.3425 | 2156 | 69 | 2154 | 83 | 14 | 16.8675 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.4159 | 90.6122 | 90.2204 | 58.0347 | 666 | 69 | 655 | 71 | 68 | 95.7746 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 74.3243 | 87.7660 | 64.4531 | 60.5344 | 495 | 69 | 495 | 273 | 223 | 81.6850 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 45.5959 | 38.9381 | 55.0000 | 97.4367 | 44 | 69 | 44 | 36 | 27 | 75.0000 | |