PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18051-18100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.6802 | 53.5032 | 58.0420 | 68.9130 | 84 | 73 | 83 | 60 | 52 | 86.6667 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 29.1765 | 45.9259 | 21.3793 | 49.5652 | 62 | 73 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 73 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | I1_5 | map_siren | het | 97.2030 | 95.6573 | 98.7995 | 79.6283 | 1608 | 73 | 1646 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | homalt | 98.7827 | 97.7455 | 99.8422 | 90.3210 | 3165 | 73 | 3164 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9967 | 89.0226 | 97.3422 | 75.0725 | 592 | 73 | 586 | 16 | 11 | 68.7500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8154 | 96.2235 | 99.4609 | 53.5902 | 1860 | 73 | 1845 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6770 | 95.2628 | 88.3513 | 55.6869 | 1468 | 73 | 6227 | 821 | 401 | 48.8429 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4206 | 97.7525 | 97.0909 | 66.2577 | 3175 | 73 | 3204 | 96 | 3 | 3.1250 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 79.1429 | 0.0000 | 0.0000 | 277 | 73 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 81.1769 | 94.8227 | 70.9646 | 59.4330 | 1337 | 73 | 1442 | 590 | 557 | 94.4068 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0531 | 89.5265 | 99.0617 | 37.9884 | 624 | 73 | 739 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7238 | 91.2679 | 98.4516 | 67.1749 | 763 | 73 | 763 | 12 | 11 | 91.6667 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | * | 56.9106 | 48.9510 | 67.9612 | 87.2050 | 70 | 73 | 70 | 33 | 21 | 63.6364 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.0060 | 92.0824 | 66.1719 | 76.4316 | 849 | 73 | 847 | 433 | 45 | 10.3926 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 28.0702 | 17.9775 | 64.0000 | 78.6325 | 16 | 73 | 16 | 9 | 8 | 88.8889 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.0196 | 84.7280 | 85.3132 | 69.0508 | 405 | 73 | 395 | 68 | 65 | 95.5882 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.0492 | 96.8053 | 71.1966 | 41.3611 | 2212 | 73 | 3552 | 1437 | 1234 | 85.8733 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | * | 96.2111 | 96.1880 | 96.2343 | 84.4528 | 1842 | 73 | 1840 | 72 | 13 | 18.0556 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2056 | 96.5856 | 93.8645 | 49.5961 | 2065 | 73 | 2050 | 134 | 7 | 5.2239 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.4778 | 97.5667 | 80.9379 | 76.0931 | 2927 | 73 | 2934 | 691 | 651 | 94.2113 | |
| ghariani-varprowl | INDEL | D6_15 | HG002compoundhet | het | 22.6701 | 91.4720 | 12.9384 | 39.2155 | 783 | 73 | 808 | 5437 | 5400 | 99.3195 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | * | 92.9666 | 96.5808 | 89.6132 | 94.6918 | 2062 | 73 | 2062 | 239 | 29 | 12.1339 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | het | 95.1903 | 97.7872 | 92.7278 | 92.3245 | 3226 | 73 | 3226 | 253 | 51 | 20.1581 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5637 | 96.6141 | 98.5322 | 74.8332 | 2083 | 73 | 2081 | 31 | 8 | 25.8065 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.6966 | 94.8227 | 88.7701 | 73.3903 | 1337 | 73 | 1328 | 168 | 145 | 86.3095 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.5030 | 90.1484 | 97.1168 | 71.5703 | 668 | 73 | 640 | 19 | 17 | 89.4737 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7252 | 99.5058 | 99.9456 | 54.0983 | 14697 | 73 | 14698 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8632 | 98.1277 | 99.6099 | 65.9765 | 3826 | 73 | 3830 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.6815 | 98.3806 | 91.2505 | 66.8429 | 4374 | 72 | 4349 | 417 | 409 | 98.0815 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | homalt | 96.6889 | 95.3876 | 98.0263 | 58.4131 | 1489 | 72 | 1490 | 30 | 28 | 93.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | het | 83.3667 | 74.2857 | 94.9772 | 93.5455 | 208 | 72 | 208 | 11 | 3 | 27.2727 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | * | 77.5749 | 72.0930 | 83.9590 | 83.4182 | 186 | 72 | 246 | 47 | 43 | 91.4894 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 68.9695 | 59.5506 | 81.9277 | 62.6126 | 106 | 72 | 136 | 30 | 29 | 96.6667 | |
| gduggal-bwavard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 72 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6157 | 97.9161 | 99.3253 | 64.1874 | 3383 | 72 | 3386 | 23 | 21 | 91.3043 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | het | 96.0719 | 94.6067 | 97.5831 | 85.2463 | 1263 | 72 | 1292 | 32 | 2 | 6.2500 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.6228 | 97.3655 | 37.0000 | 47.7504 | 2661 | 72 | 2664 | 4536 | 4487 | 98.9198 | |
| jli-custom | INDEL | D16_PLUS | * | het | 97.9648 | 97.7208 | 98.2100 | 73.1193 | 3087 | 72 | 2853 | 52 | 37 | 71.1538 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.8991 | 87.2340 | 77.1791 | 62.6848 | 492 | 72 | 487 | 144 | 112 | 77.7778 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |