PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17751-17800 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.6612 | 98.0487 | 99.2815 | 73.6565 | 3869 | 77 | 3869 | 28 | 15 | 53.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 64.6284 | 57.3034 | 74.1007 | 75.4850 | 102 | 76 | 103 | 36 | 35 | 97.2222 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 68.6915 | 87.3964 | 56.5817 | 68.5791 | 527 | 76 | 533 | 409 | 399 | 97.5550 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.4940 | 97.3629 | 91.7893 | 91.5975 | 2806 | 76 | 2806 | 251 | 35 | 13.9442 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.5092 | 97.3937 | 91.7906 | 91.6664 | 2840 | 76 | 2840 | 254 | 35 | 13.7795 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.8939 | 99.4854 | 96.3524 | 57.0732 | 14694 | 76 | 15268 | 578 | 432 | 74.7405 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | * | 88.8754 | 97.3629 | 81.7490 | 91.8702 | 2806 | 76 | 2795 | 624 | 17 | 2.7244 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | * | 88.9493 | 97.3937 | 81.8524 | 91.9441 | 2840 | 76 | 2828 | 627 | 17 | 2.7113 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6103 | 83.5498 | 98.9744 | 59.1195 | 386 | 76 | 386 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 87.6436 | 79.6791 | 97.3770 | 64.0330 | 298 | 76 | 297 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.6078 | 11.6279 | 62.5000 | 75.7576 | 10 | 76 | 5 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | * | 99.1809 | 99.6144 | 98.7511 | 77.4196 | 19636 | 76 | 19293 | 244 | 16 | 6.5574 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | * | 96.4693 | 95.1376 | 97.8389 | 85.1430 | 1487 | 76 | 1494 | 33 | 7 | 21.2121 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.2360 | 95.2999 | 99.2524 | 31.1832 | 1541 | 76 | 1726 | 13 | 13 | 100.0000 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | hetalt | 94.3987 | 92.4975 | 96.3796 | 46.9642 | 937 | 76 | 985 | 37 | 36 | 97.2973 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1703 | 98.2906 | 98.0503 | 64.7824 | 4370 | 76 | 4325 | 86 | 81 | 94.1860 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | het | 98.0858 | 97.3268 | 98.8567 | 76.0708 | 2767 | 76 | 2767 | 32 | 7 | 21.8750 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | * | 96.9607 | 97.9766 | 95.9656 | 89.2269 | 3680 | 76 | 3687 | 155 | 21 | 13.5484 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7720 | 98.3536 | 99.1941 | 45.0969 | 4540 | 76 | 4554 | 37 | 1 | 2.7027 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | homalt | 98.7169 | 98.0239 | 99.4198 | 69.7608 | 3770 | 76 | 3770 | 22 | 12 | 54.5455 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | * | 98.3998 | 97.4709 | 99.3466 | 77.4486 | 2929 | 76 | 2889 | 19 | 3 | 15.7895 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | * | 97.8771 | 96.5392 | 99.2527 | 82.4666 | 2120 | 76 | 2125 | 16 | 1 | 6.2500 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2631 | 94.2205 | 98.3962 | 48.3858 | 1239 | 76 | 1227 | 20 | 11 | 55.0000 | |
| ciseli-custom | SNP | ti | func_cds | * | 98.7839 | 99.4488 | 98.1278 | 24.0438 | 13711 | 76 | 13680 | 261 | 31 | 11.8774 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2722 | 96.5106 | 96.0350 | 77.8916 | 2102 | 76 | 1865 | 77 | 72 | 93.5065 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | * | 95.8508 | 96.5843 | 95.1283 | 87.4762 | 2149 | 76 | 2187 | 112 | 24 | 21.4286 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ciseli-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 9.5238 | 0.0000 | 0.0000 | 8 | 76 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 58.3686 | 63.6364 | 53.9062 | 70.1284 | 133 | 76 | 138 | 118 | 36 | 30.5085 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7942 | 99.6237 | 99.9652 | 56.3615 | 20123 | 76 | 20123 | 7 | 7 | 100.0000 | |
| ckim-gatk | SNP | ti | segdup | homalt | 99.4711 | 98.9873 | 99.9596 | 87.8310 | 7429 | 76 | 7429 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7777 | 99.3930 | 98.1700 | 65.9733 | 12445 | 76 | 12285 | 229 | 215 | 93.8865 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | homalt | 76.2649 | 84.1996 | 69.6970 | 88.0938 | 405 | 76 | 414 | 180 | 160 | 88.8889 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4603 | 98.9667 | 99.9588 | 33.4796 | 7279 | 76 | 7275 | 3 | 2 | 66.6667 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0127 | 98.2067 | 99.8321 | 79.0112 | 4162 | 76 | 4162 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0488 | 98.8712 | 99.2269 | 57.4163 | 6657 | 76 | 6931 | 54 | 10 | 18.5185 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1554 | 98.2906 | 96.0462 | 69.4738 | 4370 | 76 | 4324 | 178 | 168 | 94.3820 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 36 | 76 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.0411 | 72.4638 | 55.7870 | 87.7238 | 200 | 76 | 241 | 191 | 59 | 30.8901 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | hetalt | 97.6373 | 95.5968 | 99.7669 | 69.6337 | 1650 | 76 | 1712 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.8368 | 57.5419 | 99.2063 | 28.0000 | 103 | 76 | 125 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 97.1748 | 96.0313 | 98.3458 | 85.2927 | 1839 | 76 | 1843 | 31 | 6 | 19.3548 | |