PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17601-17650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | * | 98.2170 | 98.4425 | 97.9924 | 88.3517 | 4930 | 78 | 4930 | 101 | 3 | 2.9703 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6420 | 97.5355 | 99.7738 | 49.4362 | 3087 | 78 | 3087 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 30.3571 | 17.8947 | 100.0000 | 94.0767 | 17 | 78 | 17 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | homalt | 98.2454 | 97.0961 | 99.4222 | 88.0153 | 2608 | 78 | 2581 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | het | 70.9283 | 88.2707 | 59.2814 | 63.1347 | 587 | 78 | 594 | 408 | 285 | 69.8529 | |
| gduggal-bwafb | SNP | ti | segdup | het | 98.5285 | 99.3516 | 97.7189 | 92.3400 | 11952 | 78 | 11952 | 279 | 6 | 2.1505 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | * | 97.8192 | 99.1259 | 96.5465 | 53.1590 | 8845 | 78 | 8890 | 318 | 86 | 27.0440 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0298 | 97.8096 | 98.2511 | 71.9586 | 3483 | 78 | 3483 | 62 | 54 | 87.0968 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | * | 96.5147 | 94.1704 | 98.9788 | 84.7782 | 1260 | 78 | 1260 | 13 | 3 | 23.0769 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7242 | 88.2707 | 97.6510 | 77.3039 | 587 | 78 | 582 | 14 | 11 | 78.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | * | 97.7384 | 95.9269 | 99.6196 | 78.1861 | 1837 | 78 | 1833 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | * | 97.7413 | 95.9773 | 99.5713 | 78.2897 | 1861 | 78 | 1858 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8308 | 98.2456 | 99.4230 | 59.7380 | 4368 | 78 | 4308 | 25 | 16 | 64.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.5874 | 83.6820 | 94.1038 | 66.9782 | 400 | 78 | 399 | 25 | 22 | 88.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.6892 | 98.3627 | 95.0717 | 77.9691 | 4686 | 78 | 4707 | 244 | 55 | 22.5410 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2199 | 97.4000 | 99.0537 | 71.5836 | 2922 | 78 | 2931 | 28 | 2 | 7.1429 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2985 | 98.8415 | 99.7597 | 44.6403 | 6655 | 78 | 6641 | 16 | 6 | 37.5000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2191 | 97.0917 | 99.3729 | 56.5754 | 2604 | 78 | 2694 | 17 | 17 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.1394 | 62.6794 | 72.2826 | 73.6011 | 131 | 78 | 133 | 51 | 50 | 98.0392 | |
| ckim-isaac | SNP | ti | func_cds | het | 99.5275 | 99.0828 | 99.9763 | 20.1440 | 8426 | 78 | 8426 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2951 | 97.8471 | 98.7472 | 84.7253 | 3545 | 78 | 3547 | 45 | 27 | 60.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2929 | 99.5560 | 99.0312 | 67.2462 | 17490 | 78 | 17480 | 171 | 15 | 8.7719 | |
| dgrover-gatk | INDEL | * | map_siren | * | 98.9418 | 98.9474 | 98.9362 | 83.4662 | 7332 | 78 | 7347 | 79 | 18 | 22.7848 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.8487 | 92.3001 | 95.4501 | 48.4274 | 935 | 78 | 986 | 47 | 45 | 95.7447 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 84.0230 | 75.3943 | 94.8819 | 94.3278 | 239 | 78 | 241 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.0897 | 98.8283 | 99.3524 | 77.3626 | 6579 | 78 | 6597 | 43 | 9 | 20.9302 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 94.2709 | 89.9614 | 99.0141 | 85.8566 | 699 | 78 | 703 | 7 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.0488 | 98.3627 | 99.7446 | 66.6690 | 4686 | 78 | 4686 | 12 | 7 | 58.3333 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.8939 | 98.1187 | 99.6815 | 82.4367 | 4068 | 78 | 4068 | 13 | 7 | 53.8462 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8226 | 97.8845 | 99.7788 | 48.7459 | 3609 | 78 | 3609 | 8 | 6 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7555 | 99.1808 | 98.3339 | 49.8381 | 9443 | 78 | 9443 | 160 | 156 | 97.5000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | * | 96.9275 | 95.2526 | 98.6624 | 64.9632 | 1565 | 78 | 1549 | 21 | 10 | 47.6190 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.7813 | 89.3878 | 94.3066 | 53.8721 | 657 | 78 | 646 | 39 | 38 | 97.4359 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.1429 | 56.4246 | 100.0000 | 29.0698 | 101 | 78 | 122 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | HG002complexvar | homalt | 99.9822 | 99.9730 | 99.9913 | 19.9554 | 288496 | 78 | 288478 | 25 | 24 | 96.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | het | 98.0709 | 98.3596 | 97.7838 | 90.2767 | 4677 | 78 | 4677 | 106 | 9 | 8.4906 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | het | 98.1864 | 98.4983 | 97.8764 | 90.6378 | 5116 | 78 | 5116 | 111 | 10 | 9.0090 | |
| hfeng-pmm2 | SNP | ti | * | homalt | 99.9915 | 99.9903 | 99.9927 | 16.7561 | 802960 | 78 | 802952 | 59 | 48 | 81.3559 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0835 | 99.3208 | 98.8474 | 56.8151 | 11406 | 78 | 11406 | 133 | 125 | 93.9850 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.7813 | 89.3878 | 94.3066 | 53.8098 | 657 | 78 | 646 | 39 | 38 | 97.4359 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | * | 95.3410 | 97.9233 | 92.8914 | 88.4293 | 3678 | 78 | 3685 | 282 | 30 | 10.6383 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.9315 | 98.6064 | 93.3978 | 71.5802 | 5519 | 78 | 5503 | 389 | 233 | 59.8972 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 78 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.7059 | 58.5106 | 72.3684 | 53.7994 | 110 | 78 | 110 | 42 | 42 | 100.0000 | |