PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17551-17600 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8844 | 98.3152 | 99.4603 | 36.9967 | 4610 | 79 | 4607 | 25 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | het | 98.9851 | 99.2198 | 98.7515 | 74.5484 | 10047 | 79 | 10045 | 127 | 11 | 8.6614 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | het | 99.0157 | 99.2434 | 98.7891 | 75.7772 | 10363 | 79 | 10361 | 127 | 11 | 8.6614 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | het | 99.0261 | 99.2514 | 98.8018 | 75.8168 | 10474 | 79 | 10472 | 127 | 11 | 8.6614 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | het | 97.3472 | 97.4992 | 97.1956 | 74.5540 | 3080 | 79 | 2842 | 82 | 62 | 75.6098 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2415 | 98.7053 | 99.7836 | 77.2969 | 6023 | 79 | 5994 | 13 | 3 | 23.0769 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.6885 | 99.9447 | 54.6733 | 25280 | 79 | 25281 | 14 | 10 | 71.4286 | |
| hfeng-pmm2 | SNP | * | HG002complexvar | homalt | 99.9776 | 99.9726 | 99.9827 | 20.0544 | 288495 | 79 | 288481 | 50 | 44 | 88.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 82.1997 | 70.3008 | 98.9474 | 87.7261 | 187 | 79 | 188 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.1304 | 25.4717 | 84.3750 | 92.8731 | 27 | 79 | 27 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.0475 | 46.9799 | 83.1858 | 54.4355 | 70 | 79 | 94 | 19 | 19 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.7798 | 92.5682 | 91.0048 | 77.6662 | 984 | 79 | 951 | 94 | 57 | 60.6383 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | homalt | 98.2472 | 97.0935 | 99.4288 | 88.0788 | 2639 | 79 | 2611 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | ti | func_cds | het | 99.2690 | 99.0710 | 99.4677 | 32.1944 | 8425 | 79 | 8409 | 45 | 15 | 33.3333 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.1128 | 95.5215 | 73.5573 | 89.2251 | 1685 | 79 | 1708 | 614 | 76 | 12.3779 | |
| qzeng-custom | INDEL | D16_PLUS | * | het | 80.5778 | 97.4992 | 68.6613 | 61.3602 | 3080 | 79 | 4888 | 2231 | 308 | 13.8055 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6848 | 99.5401 | 99.8300 | 56.5387 | 17098 | 79 | 17030 | 29 | 9 | 31.0345 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.8620 | 98.3731 | 99.3556 | 61.7355 | 4777 | 79 | 4780 | 31 | 21 | 67.7419 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | homalt | 99.4222 | 98.9316 | 99.9177 | 28.6749 | 7315 | 79 | 7282 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | * | 74.6205 | 69.3798 | 80.7175 | 81.6461 | 179 | 79 | 180 | 43 | 33 | 76.7442 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | * | 75.2386 | 70.0758 | 81.2227 | 82.7430 | 185 | 79 | 186 | 43 | 33 | 76.7442 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.9524 | 49.6815 | 72.4771 | 51.3393 | 78 | 79 | 79 | 30 | 29 | 96.6667 | |
| ciseli-custom | INDEL | D6_15 | map_siren | het | 69.4186 | 71.7857 | 67.2026 | 85.2327 | 201 | 79 | 209 | 102 | 21 | 20.5882 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5939 | 97.9738 | 99.2218 | 68.0216 | 3820 | 79 | 3825 | 30 | 15 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l100_m2_e0 | het | 95.1944 | 96.5756 | 93.8521 | 85.6721 | 2228 | 79 | 2412 | 158 | 40 | 25.3165 | |
| cchapple-custom | INDEL | D1_5 | * | homalt | 99.7503 | 99.8385 | 99.6622 | 57.7109 | 48847 | 79 | 48389 | 164 | 151 | 92.0732 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.2957 | 79.5337 | 19.4805 | 82.5076 | 307 | 79 | 315 | 1302 | 53 | 4.0707 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5873 | 97.9738 | 99.2084 | 62.4678 | 3820 | 79 | 3760 | 30 | 27 | 90.0000 | |
| cchapple-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3227 | 99.7146 | 98.9339 | 60.9851 | 27599 | 79 | 27655 | 298 | 24 | 8.0537 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.3984 | 90.7602 | 72.1601 | 85.1616 | 776 | 79 | 775 | 299 | 5 | 1.6722 | |
| gduggal-snapvard | INDEL | * | func_cds | * | 83.0794 | 82.2472 | 83.9286 | 43.6242 | 366 | 79 | 423 | 81 | 65 | 80.2469 | |
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 36.2903 | 0.0000 | 0.0000 | 45 | 79 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 15.2381 | 9.1954 | 44.4444 | 84.6154 | 8 | 79 | 8 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | * | 91.0274 | 94.3892 | 87.8968 | 95.3487 | 1329 | 79 | 1329 | 183 | 52 | 28.4153 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | * | 90.1625 | 92.8377 | 87.6372 | 94.9594 | 1024 | 79 | 1198 | 169 | 138 | 81.6568 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | homalt | 81.6095 | 75.9878 | 88.1295 | 56.7652 | 250 | 79 | 245 | 33 | 30 | 90.9091 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 6.7039 | 3.6585 | 40.0000 | 94.4444 | 3 | 79 | 2 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.8576 | 69.3798 | 88.6957 | 75.3747 | 179 | 79 | 204 | 26 | 8 | 30.7692 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 80.6350 | 85.9929 | 75.9055 | 63.7764 | 485 | 79 | 482 | 153 | 100 | 65.3595 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9441 | 95.3611 | 79.8924 | 72.5785 | 1624 | 79 | 1633 | 411 | 364 | 88.5645 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | homalt | 98.6901 | 97.9459 | 99.4456 | 67.1380 | 3767 | 79 | 3767 | 21 | 11 | 52.3810 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | * | 96.0476 | 95.9257 | 96.1698 | 84.5601 | 1860 | 79 | 1858 | 74 | 14 | 18.9189 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | * | 98.2211 | 98.4437 | 97.9996 | 88.4416 | 4997 | 79 | 4997 | 102 | 3 | 2.9412 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 88.1439 | 79.2105 | 99.3485 | 55.5072 | 301 | 79 | 305 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5469 | 89.2517 | 91.8803 | 54.0275 | 656 | 79 | 645 | 57 | 56 | 98.2456 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9951 | 96.7873 | 99.2334 | 74.5777 | 2380 | 79 | 2330 | 18 | 13 | 72.2222 | |