PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16901-16950 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 4.3478 | 0.0000 | 96.8254 | 4 | 88 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | * | 97.8800 | 97.8917 | 97.8683 | 82.0892 | 4086 | 88 | 4086 | 89 | 22 | 24.7191 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.8863 | 96.6892 | 99.1133 | 68.8334 | 2570 | 88 | 2571 | 23 | 22 | 95.6522 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | het | 6.7114 | 57.6923 | 3.5629 | 37.9971 | 120 | 88 | 150 | 4060 | 4050 | 99.7537 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3685 | 95.4428 | 99.3735 | 36.0555 | 1843 | 88 | 2062 | 13 | 13 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3685 | 95.4428 | 99.3735 | 36.0555 | 1843 | 88 | 2062 | 13 | 13 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.4599 | 40.5405 | 38.4354 | 56.0538 | 60 | 88 | 113 | 181 | 161 | 88.9503 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | het | 94.5598 | 94.1567 | 94.9664 | 94.4554 | 1418 | 88 | 1415 | 75 | 20 | 26.6667 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.6652 | 95.1622 | 96.1736 | 68.5790 | 1731 | 88 | 3745 | 149 | 130 | 87.2483 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.6652 | 95.1622 | 96.1736 | 68.5790 | 1731 | 88 | 3745 | 149 | 130 | 87.2483 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | het | 96.3935 | 97.2956 | 95.5080 | 91.3622 | 3166 | 88 | 3168 | 149 | 10 | 6.7114 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| ckim-dragen | SNP | * | map_l150_m1_e0 | homalt | 99.4842 | 99.2194 | 99.7504 | 65.7675 | 11185 | 88 | 11190 | 28 | 25 | 89.2857 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5298 | 97.9511 | 80.7619 | 65.1199 | 4207 | 88 | 4219 | 1005 | 39 | 3.8806 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3973 | 93.3232 | 93.4716 | 64.9435 | 1230 | 88 | 1217 | 85 | 81 | 95.2941 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2141 | 96.6855 | 97.7484 | 68.9339 | 2567 | 88 | 2518 | 58 | 46 | 79.3103 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.3599 | 98.8445 | 99.8806 | 70.6148 | 7528 | 88 | 7528 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.3663 | 98.8561 | 99.8818 | 70.6476 | 7605 | 88 | 7605 | 9 | 8 | 88.8889 | |
| astatham-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8544 | 99.5710 | 55.1217 | 60340 | 88 | 60345 | 260 | 257 | 98.8462 | |
| anovak-vg | INDEL | * | func_cds | * | 81.4334 | 80.2247 | 82.6790 | 38.5816 | 357 | 88 | 358 | 75 | 54 | 72.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e1 | homalt | 89.8740 | 85.8065 | 94.3463 | 82.6911 | 532 | 88 | 534 | 32 | 29 | 90.6250 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | het | 82.1558 | 88.4817 | 76.6741 | 87.9456 | 676 | 88 | 687 | 209 | 69 | 33.0144 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | het | 82.1373 | 88.5714 | 76.5746 | 87.9814 | 682 | 88 | 693 | 212 | 70 | 33.0189 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0478 | 92.5550 | 97.6786 | 60.5911 | 1094 | 88 | 1094 | 26 | 23 | 88.4615 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2023 | 96.7189 | 99.7319 | 41.3917 | 2594 | 88 | 2604 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | * | 97.9708 | 97.5460 | 98.3993 | 98.1181 | 3498 | 88 | 3504 | 57 | 26 | 45.6140 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | het | 96.7544 | 97.2143 | 96.2988 | 74.5638 | 3071 | 88 | 2836 | 109 | 82 | 75.2294 | |
| raldana-dualsentieon | SNP | * | HG002complexvar | homalt | 99.9794 | 99.9695 | 99.9893 | 19.8637 | 288486 | 88 | 288471 | 31 | 29 | 93.5484 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | het | 98.4858 | 98.2735 | 98.6990 | 79.8611 | 5009 | 88 | 5007 | 66 | 44 | 66.6667 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e0 | * | 98.5577 | 98.2428 | 98.8746 | 88.2672 | 4920 | 88 | 4920 | 56 | 37 | 66.0714 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | * | 98.0795 | 97.8917 | 98.2680 | 78.2094 | 4086 | 88 | 4085 | 72 | 45 | 62.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2959 | 98.6897 | 99.9096 | 50.3888 | 6628 | 88 | 6630 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.6340 | 88.9169 | 98.8796 | 87.9595 | 706 | 88 | 706 | 8 | 3 | 37.5000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 71.0987 | 57.2816 | 93.7008 | 58.7662 | 118 | 88 | 119 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | * | 98.6338 | 98.8840 | 98.3849 | 89.8595 | 7797 | 88 | 7797 | 128 | 16 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | het | 99.0753 | 98.7331 | 99.4200 | 74.8128 | 6858 | 88 | 6856 | 40 | 10 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8635 | 99.2337 | 98.4961 | 57.7259 | 11396 | 88 | 11396 | 174 | 164 | 94.2529 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9417 | 80.9524 | 98.6807 | 38.3740 | 374 | 88 | 374 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | * | 64.8438 | 48.5380 | 97.6471 | 96.7779 | 83 | 88 | 83 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.7351 | 86.0317 | 93.7716 | 60.6535 | 542 | 88 | 542 | 36 | 19 | 52.7778 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | * | homalt | 93.8558 | 94.3626 | 93.3544 | 58.5193 | 1473 | 88 | 1475 | 105 | 76 | 72.3810 | |
| dgrover-gatk | SNP | ti | map_l100_m2_e1 | homalt | 99.7264 | 99.5242 | 99.9294 | 59.8793 | 18406 | 88 | 18406 | 13 | 11 | 84.6154 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4476 | 97.8775 | 99.0244 | 81.2649 | 4058 | 88 | 4060 | 40 | 19 | 47.5000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | * | 96.4393 | 96.0449 | 96.8369 | 94.4522 | 2137 | 88 | 2939 | 96 | 68 | 70.8333 | |
| ltrigg-rtg2 | SNP | * | segdup | het | 98.7596 | 99.4918 | 98.0380 | 86.6405 | 17229 | 88 | 17239 | 345 | 3 | 0.8696 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | hetalt | 95.3564 | 92.8046 | 98.0525 | 53.9032 | 1135 | 88 | 1158 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.8135 | 92.0290 | 95.6685 | 83.4063 | 1016 | 88 | 1016 | 46 | 28 | 60.8696 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6267 | 97.7614 | 99.5075 | 53.2307 | 3843 | 88 | 3839 | 19 | 2 | 10.5263 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7182 | 95.3340 | 98.1431 | 70.1548 | 1798 | 88 | 1797 | 34 | 22 | 64.7059 | |