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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 334 335 336 337 338 339 340 341 342 ... 1720 1721 » 16851-16900 / 86044 show all
ltrigg-rtg1	INDEL	D6_15	HG002complexvar	hetalt	93.3550	91.2142	95.5988	55.5303	924	89	934	43	43	100.0000
jpowers-varprowl	SNP	*	map_l250_m2_e1	homalt	98.1703	96.7255	99.6588	90.0637	2629	89	2629	9	5	55.5556
rpoplin-dv42	INDEL	*	map_siren	het	98.2013	98.0257	98.3774	81.3714	4419	89	4426	73	37	50.6849
gduggal-bwafb	INDEL	*	map_l125_m1_e0	*	96.9083	95.7760	98.0676	85.9889	2018	89	2030	40	8	20.0000
gduggal-bwavard	INDEL	*	map_l100_m1_e0	homalt	95.9129	92.7465	99.3031	75.5380	1138	89	1140	8	5	62.5000
gduggal-bwavard	INDEL	D16_PLUS	HG002complexvar	homalt	80.7881	69.2042	97.0297	57.4737	200	89	196	6	5	83.3333
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	53.3937	39.8649	80.8219	88.1107	59	89	59	14	7	50.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.8331	79.9097	100.0000	43.6306	354	89	354	0	0
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	79.8194	68.1004	96.4103	67.2819	190	89	188	7	7	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	57.1429	40.2685	98.3607	88.5338	60	89	60	1	0	0.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	58.2160	41.0596	100.0000	66.4865	62	89	62	0	0
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	79.4418	90.8058	70.6058	71.2226	879	89	944	393	338	86.0051
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.8820	73.9003	96.9811	55.3872	252	89	257	8	7	87.5000
ckim-isaac	INDEL	I1_5	HG002compoundhet	homalt	68.0851	72.9483	63.8298	82.4627	240	89	240	136	132	97.0588
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1609	98.4997	99.8312	49.4969	5843	89	5913	10	6	60.0000
qzeng-custom	SNP	ti	HG002compoundhet	homalt	98.8966	98.7963	98.9971	38.0829	7305	89	5429	55	41	74.5455
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.3128	96.6816	100.0000	40.4561	2593	89	2611	0	0
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.8820	73.9003	96.9811	55.3120	252	89	257	8	7	87.5000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4513	96.2447	92.7236	43.0556	2281	89	2281	179	171	95.5307
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
hfeng-pmm2	SNP	*	map_l250_m2_e1	*	98.6325	98.8857	98.3807	89.9200	7898	89	7898	130	16	12.3077
hfeng-pmm1	SNP	*	map_l250_m1_e0	het	98.4804	98.1283	98.8350	88.4918	4666	89	4666	55	10	18.1818
hfeng-pmm1	SNP	tv	map_l150_m2_e0	het	99.1075	98.7728	99.4445	75.8631	7163	89	7161	40	10	25.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	72.2241	56.7961	99.1597	58.2456	117	89	118	1	0	0.0000
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	89	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	HG002complexvar	het	78.0918	86.6165	71.0947	66.0117	576	89	578	235	228	97.0213
ghariani-varprowl	INDEL	I1_5	segdup	*	91.1523	91.5958	90.7129	95.2994	970	89	967	99	67	67.6768
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	69.3384	66.5414	72.3810	85.5372	177	89	152	58	39	67.2414
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	89.8366	96.6865	83.8931	79.2152	2597	89	2573	494	7	1.4170
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.2185	96.7495	99.7328	29.9465	2649	89	2613	7	4	57.1429
gduggal-snapvard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.8156	98.5801	99.0522	46.3316	6179	89	6166	59	7	11.8644
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	82.6345	81.9473	83.3333	60.9010	404	89	405	81	78	96.2963
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.4627	89.8402	33.1807	64.3673	787	89	797	1605	1594	99.3146
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	96.1174	96.1050	96.1298	45.0129	2196	89	2459	99	35	35.3535
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	89	0	0	0
gduggal-snapplat	INDEL	*	map_l150_m0_e0	het	78.1739	73.9003	82.9721	96.4230	252	89	268	55	9	16.3636
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	74.8352	86.7069	65.8228	74.0520	574	88	572	297	264	88.8889
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt	0.0000	29.6000	0.0000	0.0000	37	88	0	0	0
gduggal-snapvard	INDEL	D1_5	HG002compoundhet	homalt	75.8563	69.7595	83.1210	54.7550	203	88	261	53	49	92.4528
gduggal-snapplat	INDEL	D6_15	map_l125_m2_e1	*	44.8505	31.2500	79.4118	95.5145	40	88	27	7	1	14.2857
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	2.1951	1.1236	47.3684	61.6162	1	88	18	20	12	60.0000
ghariani-varprowl	INDEL	D1_5	segdup	*	91.2316	92.0218	90.4550	95.5776	1015	88	1014	107	65	60.7477
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	*	68.8299	66.6667	71.1382	89.1868	176	88	175	71	65	91.5493
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	56.8463	56.2189	57.4879	72.4734	113	88	119	88	85	96.5909
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	51.7990	43.9490	63.0631	54.1322	69	88	70	41	41	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	55.9006	50.5618	62.5000	73.6264	90	88	90	54	51	94.4444
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	64.6126	88.1402	50.9992	62.4437	654	88	638	613	589	96.0848

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