PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16651-16700 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | * | 98.8419 | 98.8169 | 98.8670 | 81.9794 | 7768 | 93 | 7766 | 89 | 19 | 21.3483 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | * | 98.0317 | 96.9052 | 99.1848 | 83.6671 | 2912 | 93 | 2920 | 24 | 8 | 33.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.3637 | 80.6250 | 95.3317 | 77.1605 | 387 | 93 | 388 | 19 | 18 | 94.7368 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.6644 | 48.0447 | 98.8636 | 26.6667 | 86 | 93 | 87 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.2929 | 93.9216 | 96.7048 | 85.0071 | 1437 | 93 | 1438 | 49 | 29 | 59.1837 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.2929 | 93.9216 | 96.7048 | 85.0071 | 1437 | 93 | 1438 | 49 | 29 | 59.1837 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | het | 96.8404 | 97.0560 | 96.6258 | 75.3280 | 3066 | 93 | 2835 | 99 | 55 | 55.5556 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | * | 96.3580 | 94.4005 | 98.3985 | 65.2184 | 1551 | 92 | 1536 | 25 | 15 | 60.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | het | 98.5612 | 98.2523 | 98.8721 | 88.8393 | 5172 | 92 | 5172 | 59 | 11 | 18.6441 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.6000 | 88.4131 | 99.4334 | 87.7068 | 702 | 92 | 702 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.1473 | 97.7063 | 96.5946 | 58.2763 | 3919 | 92 | 3886 | 137 | 15 | 10.9489 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.7824 | 97.6925 | 99.8969 | 31.5687 | 3895 | 92 | 3874 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 9.8039 | 5.1546 | 100.0000 | 72.7273 | 5 | 92 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 15.0000 | 57.4468 | 0 | 92 | 3 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7234 | 98.5247 | 93.0769 | 67.4612 | 6144 | 92 | 5324 | 396 | 73 | 18.4343 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | het | 97.2093 | 99.5661 | 94.9614 | 74.6186 | 21113 | 92 | 20524 | 1089 | 21 | 1.9284 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8642 | 99.2036 | 98.5271 | 69.1157 | 11460 | 92 | 11104 | 166 | 51 | 30.7229 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8642 | 99.2036 | 98.5271 | 69.1157 | 11460 | 92 | 11104 | 166 | 51 | 30.7229 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | * | 96.9636 | 95.8106 | 98.1447 | 86.9397 | 2104 | 92 | 2116 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 24.6154 | 14.8148 | 72.7273 | 60.7143 | 16 | 92 | 16 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.3609 | 86.1027 | 90.7407 | 70.8221 | 570 | 92 | 686 | 70 | 40 | 57.1429 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.1414 | 92.1902 | 94.1126 | 70.7669 | 1086 | 92 | 1087 | 68 | 66 | 97.0588 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.2280 | 46.5116 | 98.7013 | 74.5875 | 80 | 92 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.7642 | 95.7991 | 99.8117 | 30.3607 | 2098 | 92 | 2120 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | het | 96.2239 | 93.3861 | 99.2395 | 79.6156 | 1299 | 92 | 1305 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | het | 96.2007 | 93.4659 | 99.1004 | 79.7418 | 1316 | 92 | 1322 | 12 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 56.8695 | 48.3146 | 69.1057 | 74.5868 | 86 | 92 | 85 | 38 | 38 | 100.0000 | |
| jpowers-varprowl | SNP | * | func_cds | * | 99.3809 | 99.4931 | 99.2689 | 29.1793 | 18058 | 92 | 18058 | 133 | 14 | 10.5263 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.1359 | 92.9012 | 75.2282 | 88.8693 | 1204 | 92 | 1236 | 407 | 118 | 28.9926 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4218 | 98.7654 | 96.1142 | 48.1999 | 7360 | 92 | 7371 | 298 | 81 | 27.1812 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | het | 98.4127 | 97.9096 | 98.9210 | 71.8623 | 4309 | 92 | 4309 | 47 | 14 | 29.7872 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | het | 88.3834 | 86.1654 | 90.7186 | 58.7909 | 573 | 92 | 606 | 62 | 11 | 17.7419 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.0302 | 67.8322 | 97.5771 | 39.4667 | 194 | 92 | 443 | 11 | 8 | 72.7273 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6532 | 98.4263 | 98.8811 | 62.2592 | 5754 | 92 | 5656 | 64 | 24 | 37.5000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6532 | 98.4263 | 98.8811 | 62.2592 | 5754 | 92 | 5656 | 64 | 24 | 37.5000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | het | 91.9911 | 86.1654 | 98.6616 | 46.5235 | 573 | 92 | 516 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7618 | 99.5445 | 99.9801 | 51.1635 | 20107 | 92 | 20081 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | * | segdup | * | 99.1371 | 99.6722 | 98.6078 | 87.3153 | 27975 | 92 | 27977 | 395 | 53 | 13.4177 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6157 | 98.5123 | 98.7194 | 55.0135 | 6092 | 92 | 6090 | 79 | 51 | 64.5570 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 25.8065 | 0.0000 | 0.0000 | 32 | 92 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 26.4000 | 0.0000 | 0.0000 | 33 | 92 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 17.8914 | 14.8148 | 22.5806 | 56.6434 | 16 | 92 | 14 | 48 | 8 | 16.6667 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | homalt | 99.7908 | 99.6657 | 99.9162 | 60.2352 | 27431 | 92 | 27431 | 23 | 18 | 78.2609 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | * | 98.4835 | 98.8332 | 98.1363 | 89.4731 | 7793 | 92 | 7793 | 148 | 32 | 21.6216 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.6546 | 90.5641 | 99.1321 | 40.6411 | 883 | 92 | 1028 | 9 | 9 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.5299 | 91.9369 | 97.2735 | 78.9642 | 1049 | 92 | 1213 | 34 | 29 | 85.2941 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | homalt | 98.1315 | 96.6152 | 99.6963 | 88.8565 | 2626 | 92 | 2626 | 8 | 4 | 50.0000 | |