PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16251-16300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.5202 | 96.8720 | 84.9501 | 59.2685 | 3066 | 99 | 3065 | 543 | 542 | 99.8158 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 61.7761 | 44.6927 | 100.0000 | 30.6667 | 80 | 99 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.4481 | 79.2887 | 100.0000 | 56.8627 | 379 | 99 | 374 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 99 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | HG002compoundhet | homalt | 99.5150 | 99.0818 | 99.9520 | 31.0764 | 10683 | 99 | 10419 | 5 | 5 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | homalt | 98.1039 | 96.3142 | 99.9613 | 85.0046 | 2587 | 99 | 2586 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.8164 | 79.8780 | 33.1115 | 59.9867 | 393 | 99 | 398 | 804 | 747 | 92.9104 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 71.0670 | 65.7439 | 77.3279 | 94.6386 | 190 | 99 | 191 | 56 | 18 | 32.1429 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.8907 | 65.6250 | 58.5586 | 70.8916 | 189 | 99 | 195 | 138 | 60 | 43.4783 | |
| ckim-gatk | SNP | tv | HG002compoundhet | * | 99.2966 | 98.8905 | 99.7061 | 49.4688 | 8824 | 99 | 8821 | 26 | 17 | 65.3846 | |
| ckim-isaac | INDEL | * | map_siren | hetalt | 73.9743 | 59.9190 | 96.6443 | 83.7336 | 148 | 99 | 144 | 5 | 4 | 80.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.2221 | 93.4610 | 97.0508 | 84.9985 | 1415 | 99 | 1415 | 43 | 17 | 39.5349 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.9929 | 92.3611 | 95.6835 | 84.8474 | 1197 | 99 | 1197 | 54 | 26 | 48.1481 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | * | 98.8124 | 98.0232 | 99.6144 | 88.6331 | 4909 | 99 | 4909 | 19 | 9 | 47.3684 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.7431 | 89.6335 | 96.0762 | 74.1823 | 856 | 99 | 857 | 35 | 22 | 62.8571 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.9365 | 51.9417 | 98.1651 | 46.0396 | 107 | 99 | 107 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.5153 | 99.1538 | 99.8795 | 71.2083 | 11600 | 99 | 11600 | 14 | 10 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.5206 | 99.1629 | 99.8808 | 71.2164 | 11728 | 99 | 11728 | 14 | 10 | 71.4286 | |
| dgrover-gatk | SNP | tv | map_l150_m1_e0 | * | 99.0155 | 99.0927 | 98.9384 | 77.4338 | 10813 | 99 | 10811 | 116 | 24 | 20.6897 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | * | 99.0452 | 99.1281 | 98.9624 | 78.7121 | 11256 | 99 | 11254 | 118 | 24 | 20.3390 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | * | 99.0574 | 99.1393 | 98.9756 | 78.7166 | 11403 | 99 | 11401 | 118 | 24 | 20.3390 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5197 | 89.8462 | 99.7062 | 40.7085 | 876 | 99 | 1018 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.8959 | 99.9811 | 22.6324 | 95012 | 99 | 94994 | 18 | 14 | 77.7778 | |
| jlack-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.3888 | 98.9052 | 99.8772 | 60.2177 | 8944 | 99 | 8944 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.4002 | 98.9255 | 99.8795 | 62.7206 | 9115 | 99 | 9115 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.4059 | 98.9357 | 99.8806 | 62.6933 | 9203 | 99 | 9203 | 11 | 7 | 63.6364 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | het | 99.3308 | 99.2393 | 99.4225 | 76.8259 | 12916 | 99 | 12912 | 75 | 8 | 10.6667 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0087 | 96.3087 | 99.7699 | 41.5864 | 2583 | 99 | 2601 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | * | 98.8139 | 98.6292 | 98.9993 | 88.0247 | 7123 | 99 | 7123 | 72 | 16 | 22.2222 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | * | 99.3066 | 99.0927 | 99.5213 | 73.8197 | 10813 | 99 | 10811 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.8128 | 92.2530 | 99.6584 | 86.7818 | 1167 | 98 | 1167 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5761 | 89.9487 | 99.7053 | 41.1561 | 877 | 98 | 1015 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2551 | 77.6765 | 99.5283 | 34.8694 | 341 | 98 | 422 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | homalt | 98.7968 | 97.8179 | 99.7955 | 67.3853 | 4393 | 98 | 4393 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8898 | 99.3274 | 96.4931 | 80.2111 | 14473 | 98 | 14473 | 526 | 28 | 5.3232 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8898 | 99.3274 | 96.4931 | 80.2111 | 14473 | 98 | 14473 | 526 | 28 | 5.3232 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.5952 | 84.4937 | 100.0000 | 38.5463 | 534 | 98 | 558 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | het | 99.3316 | 99.2392 | 99.4243 | 76.7413 | 12783 | 98 | 12779 | 74 | 8 | 10.8108 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | homalt | 99.4956 | 99.1127 | 99.8814 | 67.6839 | 10947 | 98 | 10947 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.7551 | 27.4074 | 60.6557 | 81.1728 | 37 | 98 | 37 | 24 | 4 | 16.6667 | |
| gduggal-bwafb | INDEL | * | segdup | * | 97.4038 | 96.1659 | 98.6739 | 94.2256 | 2458 | 98 | 2530 | 34 | 21 | 61.7647 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 71.8588 | 77.9279 | 66.6667 | 60.8225 | 346 | 98 | 362 | 181 | 179 | 98.8950 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 78.8161 | 88.4841 | 71.0526 | 89.1898 | 753 | 98 | 729 | 297 | 73 | 24.5791 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | het | 93.2290 | 92.6592 | 93.8060 | 83.9790 | 1237 | 98 | 1257 | 83 | 14 | 16.8675 | |