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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 308 309 310 311 312 313 314 315 316 ... 1720 1721 » 15551-15600 / 86044 show all
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2708	99.4280	99.1141	69.5332	19467	112	19467	174	16	9.1954
ckim-isaac	SNP	*	func_cds	het	99.4778	98.9965	99.9638	21.3254	11049	112	11049	4	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	*	hetalt	96.6957	94.2059	99.3207	38.1824	1821	112	2047	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	*	95.5217	95.2157	95.8298	35.3889	2229	112	2229	97	95	97.9381
ckim-isaac	INDEL	D1_5	map_l150_m2_e1	homalt	70.6494	54.8387	99.2701	83.9013	136	112	136	1	1	100.0000
egarrison-hhga	SNP	tv	map_l150_m1_e0	het	99.0220	98.3876	99.6646	73.3388	6834	112	6834	23	9	39.1304
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3082	94.8858	99.8574	33.4809	2078	112	2101	3	3	100.0000
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	35.8169	30.4348	43.5115	29.1892	49	112	57	74	60	81.0811
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.8292	99.0334	94.7210	60.8998	11373	111	11986	668	500	74.8503
asubramanian-gatk	SNP	tv	segdup	homalt	98.1636	96.5720	99.8085	89.8001	3127	111	3127	6	6	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.9665	94.7838	95.1498	73.0488	2017	111	2001	102	87	85.2941
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.1919	91.6667	60.9150	62.8898	1221	111	1225	786	754	95.9288
gduggal-snapvard	INDEL	D6_15	map_l100_m2_e1	*	65.5947	59.6364	72.8758	83.1683	164	111	223	83	59	71.0843
gduggal-snapvard	INDEL	*	map_l150_m2_e1	*	85.0852	92.2863	78.9265	90.9345	1328	111	1794	479	153	31.9415
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	19.2870	17.7778	21.0762	81.7661	24	111	47	176	45	25.5682
gduggal-snapplat	INDEL	D1_5	map_l100_m2_e0	homalt	89.1147	81.8331	97.8188	86.9556	500	111	583	13	1	7.6923
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.9278	97.6646	85.0604	50.5657	4642	111	4646	816	787	96.4461
gduggal-snapfb	SNP	*	segdup	het	98.5769	99.3590	97.8069	92.1233	17206	111	17215	386	16	4.1451
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9711	98.6779	99.2660	59.5335	8285	111	8250	61	52	85.2459
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.5369	96.2764	98.8308	48.6037	2870	111	2874	34	25	73.5294
jli-custom	SNP	tv	map_l150_m1_e0	het	98.7145	98.4020	99.0291	72.7212	6835	111	6834	67	19	28.3582
jli-custom	SNP	tv	map_l150_m2_e0	het	98.7416	98.4694	99.0154	74.3882	7141	111	7140	71	19	26.7606
jli-custom	SNP	tv	map_l150_m2_e1	het	98.7581	98.4894	99.0283	74.4439	7237	111	7236	71	19	26.7606
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.1044	93.8977	98.4174	74.4802	1708	111	1679	27	14	51.8519
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.1044	93.8977	98.4174	74.4802	1708	111	1679	27	14	51.8519
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.2318	91.4352	95.1004	84.7221	1185	111	1184	61	36	59.0164
ndellapenna-hhga	SNP	ti	map_siren	homalt	99.8244	99.7072	99.9418	51.3860	37805	111	37806	22	20	90.9091
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	90.2206	83.1563	98.5965	64.1509	548	111	562	8	8	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	90.2206	83.1563	98.5965	64.1509	548	111	562	8	8	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	82.7354	76.8750	89.5631	81.5825	369	111	369	43	43	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.2488	96.4929	90.2158	52.0822	3054	111	3052	331	137	41.3897
qzeng-custom	INDEL	D16_PLUS	HG002complexvar	*	86.2026	93.2441	80.1500	61.6049	1532	111	1603	397	75	18.8917
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	78.9525	73.1884	85.7021	53.5402	303	111	1001	167	136	81.4371
qzeng-custom	INDEL	I1_5	map_l100_m0_e0	het	77.6186	65.9509	94.3020	93.0987	215	111	331	20	8	40.0000
qzeng-custom	INDEL	I1_5	map_l150_m1_e0	het	76.1696	62.8763	96.5909	95.0884	188	111	255	9	6	66.6667
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	96.0758	97.7052	94.4998	74.6425	4726	111	4742	276	80	28.9855
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	0.8929	0.0000	0.0000	1	111	0	0	0
gduggal-bwavard	INDEL	I1_5	map_siren	hetalt	0.0000	0.8929	0.0000	0.0000	1	111	0	0	0
gduggal-bwavard	SNP	*	func_cds	het	99.2091	99.0055	99.4135	34.5015	11050	111	11018	65	23	35.3846
eyeh-varpipe	SNP	*	map_l125_m2_e0	het	98.1728	99.6214	96.7658	76.7357	29207	111	28304	946	28	2.9598
gduggal-bwaplat	INDEL	*	map_l250_m1_e0	het	58.7361	41.5789	100.0000	99.0493	79	111	79	0	0
ckim-dragen	SNP	ti	map_l250_m2_e1	*	97.3249	97.8132	96.8415	89.7690	4965	111	4967	162	20	12.3457
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ciseli-custom	INDEL	I1_5	map_l150_m2_e1	het	63.3474	64.9842	61.7910	92.1527	206	111	207	128	110	85.9375
dgrover-gatk	SNP	tv	*	homalt	99.9813	99.9706	99.9920	19.9848	377012	111	376997	30	24	80.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000

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