PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14651-14700 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | * | het | 99.0039 | 98.6943 | 99.3155 | 60.3259 | 9902 | 131 | 9866 | 68 | 49 | 72.0588 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7070 | 97.8532 | 99.5759 | 69.9799 | 5971 | 131 | 11741 | 50 | 42 | 84.0000 | |
| ckim-gatk | SNP | ti | segdup | * | 98.9344 | 99.3295 | 98.5425 | 92.9771 | 19406 | 131 | 19404 | 287 | 8 | 2.7875 | |
| ciseli-custom | SNP | * | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ciseli-custom | SNP | tv | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ckim-dragen | INDEL | * | map_siren | * | 97.9669 | 98.2321 | 97.7032 | 83.7470 | 7279 | 131 | 7274 | 171 | 29 | 16.9591 | |
| cchapple-custom | INDEL | * | map_l100_m2_e0 | * | 95.9812 | 96.4527 | 95.5142 | 84.7037 | 3562 | 131 | 3641 | 171 | 49 | 28.6550 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | het | 98.0692 | 99.1503 | 97.0114 | 73.5010 | 15286 | 131 | 15289 | 471 | 32 | 6.7941 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | het | 98.0513 | 99.1697 | 96.9579 | 75.2085 | 15646 | 131 | 15649 | 491 | 32 | 6.5173 | |
| ciseli-custom | INDEL | I1_5 | segdup | * | 88.5870 | 87.6298 | 89.5652 | 93.7669 | 928 | 131 | 927 | 108 | 88 | 81.4815 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.0828 | 98.2972 | 99.8811 | 71.3252 | 7562 | 131 | 7562 | 9 | 7 | 77.7778 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.2172 | 86.9261 | 98.1941 | 63.7331 | 871 | 131 | 870 | 16 | 12 | 75.0000 | |
| hfeng-pmm3 | SNP | * | * | homalt | 99.9916 | 99.9889 | 99.9942 | 17.9575 | 1180030 | 131 | 1180013 | 68 | 45 | 66.1765 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.9992 | 39.3519 | 91.3043 | 52.3316 | 85 | 131 | 84 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | * | 94.8003 | 95.0510 | 94.5509 | 89.8505 | 2516 | 131 | 2516 | 145 | 53 | 36.5517 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 74.9014 | 73.1006 | 76.7932 | 54.3353 | 356 | 131 | 364 | 110 | 109 | 99.0909 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.3108 | 61.8076 | 96.3636 | 56.5217 | 212 | 131 | 212 | 8 | 7 | 87.5000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 36.9757 | 51.3011 | 28.9044 | 74.0000 | 138 | 131 | 124 | 305 | 17 | 5.5738 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 9.3220 | 7.7465 | 11.7021 | 43.7126 | 11 | 131 | 11 | 83 | 83 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6024 | 95.6055 | 99.6844 | 50.8784 | 2850 | 131 | 2843 | 9 | 6 | 66.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | * | 97.5357 | 95.4545 | 99.7097 | 82.4960 | 2751 | 131 | 2748 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | * | 97.5651 | 95.5075 | 99.7133 | 82.6147 | 2785 | 131 | 2782 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | * | 97.6819 | 96.3469 | 99.0544 | 78.3512 | 3455 | 131 | 3457 | 33 | 4 | 12.1212 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | het | 91.6667 | 85.9743 | 98.1663 | 94.6856 | 803 | 131 | 803 | 15 | 1 | 6.6667 | |
| astatham-gatk | SNP | tv | segdup | het | 98.6416 | 97.5222 | 99.7869 | 92.4167 | 5156 | 131 | 5152 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3387 | 95.0659 | 95.6131 | 74.9211 | 2524 | 131 | 2659 | 122 | 56 | 45.9016 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6445 | 93.2160 | 98.2030 | 39.3698 | 1800 | 131 | 2022 | 37 | 31 | 83.7838 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6445 | 93.2160 | 98.2030 | 39.3698 | 1800 | 131 | 2022 | 37 | 31 | 83.7838 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8963 | 88.6776 | 95.3575 | 90.2011 | 1026 | 131 | 1027 | 50 | 5 | 10.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | het | 99.1180 | 99.1503 | 99.0858 | 64.8238 | 15286 | 131 | 15282 | 141 | 59 | 41.8440 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | het | 99.1350 | 99.1697 | 99.1004 | 66.6194 | 15646 | 131 | 15642 | 142 | 59 | 41.5493 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | het | 99.1406 | 99.1781 | 99.1032 | 66.6722 | 15807 | 131 | 15803 | 143 | 59 | 41.2587 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | homalt | 99.4988 | 99.2251 | 99.7740 | 66.6415 | 16774 | 131 | 16774 | 38 | 37 | 97.3684 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | het | 96.9467 | 98.6218 | 95.3275 | 45.8199 | 9374 | 131 | 9446 | 463 | 78 | 16.8467 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.3415 | 30.3191 | 98.2759 | 68.9840 | 57 | 131 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.2658 | 65.4354 | 94.3182 | 71.1160 | 248 | 131 | 249 | 15 | 14 | 93.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.8170 | 81.7294 | 42.3803 | 38.8099 | 586 | 131 | 584 | 794 | 776 | 97.7330 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | * | 96.0860 | 95.6406 | 96.5357 | 78.7530 | 2874 | 131 | 3316 | 119 | 92 | 77.3109 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.8315 | 84.1019 | 79.6804 | 71.0030 | 693 | 131 | 698 | 178 | 114 | 64.0449 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.3231 | 91.0641 | 100.0000 | 50.9552 | 1335 | 131 | 1335 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.7576 | 0.0000 | 0.0000 | 1 | 131 | 0 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5533 | 98.7871 | 98.3205 | 78.4263 | 10670 | 131 | 10713 | 183 | 3 | 1.6393 | |