PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14201-14250 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7264 | 98.4342 | 99.0203 | 74.1270 | 8990 | 143 | 8995 | 89 | 19 | 21.3483 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.2372 | 96.7836 | 76.1521 | 58.2609 | 4303 | 143 | 4825 | 1511 | 1481 | 98.0146 | |
| gduggal-bwaplat | SNP | * | func_cds | * | 99.4779 | 99.2121 | 99.7452 | 34.2475 | 18007 | 143 | 18007 | 46 | 4 | 8.6957 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 9.9792 | 5.2980 | 85.7143 | 70.0000 | 8 | 143 | 18 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0757 | 76.5957 | 98.2337 | 44.2424 | 468 | 143 | 1446 | 26 | 26 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | het | 78.6071 | 93.9278 | 67.5834 | 56.2348 | 2212 | 143 | 2187 | 1049 | 981 | 93.5176 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | * | 94.4209 | 93.4882 | 95.3725 | 87.3515 | 2053 | 143 | 2061 | 100 | 24 | 24.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | * | 98.7944 | 99.6939 | 97.9109 | 74.9243 | 46580 | 143 | 45227 | 965 | 38 | 3.9378 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 143 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 143 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 26.6350 | 19.2090 | 43.4211 | 75.9494 | 34 | 143 | 33 | 43 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.9391 | 31.0680 | 18.1818 | 56.7921 | 64 | 142 | 48 | 216 | 4 | 1.8519 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | * | 93.7882 | 93.3489 | 94.2317 | 93.9033 | 1993 | 142 | 1993 | 122 | 43 | 35.2459 | |
| gduggal-snapfb | SNP | * | segdup | * | 98.9601 | 99.4941 | 98.4319 | 91.5712 | 27925 | 142 | 27933 | 445 | 34 | 7.6405 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5798 | 99.2191 | 94.0773 | 54.5022 | 18041 | 142 | 18092 | 1139 | 144 | 12.6427 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.8073 | 85.3306 | 35.1672 | 63.7131 | 826 | 142 | 831 | 1532 | 1487 | 97.0627 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 13.3942 | 7.1895 | 97.7778 | 42.3077 | 11 | 142 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | * | 79.3745 | 93.3489 | 69.0393 | 94.3087 | 1993 | 142 | 1969 | 883 | 24 | 2.7180 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.3152 | 93.7856 | 76.5821 | 40.7415 | 2143 | 142 | 2142 | 655 | 651 | 99.3893 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | * | 92.2045 | 93.3489 | 91.0878 | 95.0147 | 1993 | 142 | 1993 | 195 | 31 | 15.8974 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6238 | 94.6516 | 98.6800 | 66.1797 | 2513 | 142 | 2467 | 33 | 25 | 75.7576 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.8124 | 95.6628 | 97.9899 | 63.3939 | 3132 | 142 | 3120 | 64 | 61 | 95.3125 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.4044 | 84.1695 | 100.0000 | 41.9118 | 755 | 142 | 790 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | * | 98.1740 | 97.0367 | 99.3383 | 57.2224 | 4650 | 142 | 4654 | 31 | 31 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5585 | 99.2191 | 99.9003 | 37.7315 | 18041 | 142 | 18038 | 18 | 6 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1373 | 96.5750 | 99.7509 | 81.8576 | 4004 | 142 | 4004 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8131 | 85.8283 | 96.4126 | 64.6593 | 860 | 142 | 860 | 32 | 26 | 81.2500 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3283 | 99.2191 | 99.4377 | 37.1644 | 18041 | 142 | 18038 | 102 | 2 | 1.9608 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | * | 98.0609 | 98.0338 | 98.0881 | 87.5648 | 7080 | 142 | 7080 | 138 | 6 | 4.3478 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0772 | 96.5750 | 99.6268 | 81.0951 | 4004 | 142 | 4004 | 15 | 7 | 46.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2450 | 95.6628 | 96.8343 | 65.6357 | 3132 | 142 | 3120 | 102 | 100 | 98.0392 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5548 | 94.1128 | 99.1270 | 61.5152 | 2270 | 142 | 2271 | 20 | 15 | 75.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.3371 | 87.1377 | 83.6094 | 85.7161 | 962 | 142 | 959 | 188 | 129 | 68.6170 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.6741 | 97.8739 | 73.0725 | 38.0893 | 6537 | 142 | 6947 | 2560 | 2496 | 97.5000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 82.0933 | 0.0000 | 0.0000 | 651 | 142 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 76.0681 | 70.4167 | 82.7057 | 61.6372 | 338 | 142 | 1186 | 248 | 176 | 70.9677 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | hetalt | 95.7476 | 92.6539 | 99.0550 | 39.6309 | 1791 | 142 | 1782 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.7426 | 92.6463 | 99.0529 | 39.5216 | 1789 | 142 | 1778 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.7426 | 92.6463 | 99.0529 | 39.5216 | 1789 | 142 | 1778 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | * | 98.7938 | 99.6867 | 97.9168 | 73.3897 | 45185 | 142 | 43853 | 933 | 38 | 4.0729 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.0588 | 31.0680 | 96.9697 | 73.0612 | 64 | 142 | 64 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.5071 | 48.5507 | 91.7808 | 97.3961 | 134 | 142 | 134 | 12 | 2 | 16.6667 | |