PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13951-14000 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.4954 | 57.0201 | 99.5000 | 79.8184 | 199 | 150 | 199 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.5210 | 93.9856 | 99.1970 | 53.9957 | 2344 | 150 | 2347 | 19 | 2 | 10.5263 | |
| bgallagher-sentieon | INDEL | D16_PLUS | * | * | 97.6204 | 97.7889 | 97.4525 | 70.3579 | 6634 | 150 | 6618 | 173 | 117 | 67.6301 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8787 | 94.0922 | 99.8354 | 35.2518 | 2389 | 150 | 2426 | 4 | 4 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 82.2656 | 88.2213 | 77.0631 | 82.3781 | 1116 | 149 | 1270 | 378 | 203 | 53.7037 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 11.7647 | 6.8750 | 40.7407 | 67.2727 | 11 | 149 | 22 | 32 | 14 | 43.7500 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 94.3646 | 0.0000 | 0.0000 | 2495 | 149 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m1_e0 | * | 57.5139 | 51.1475 | 65.6904 | 97.4137 | 156 | 149 | 157 | 82 | 40 | 48.7805 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.7567 | 52.0900 | 33.4737 | 59.2973 | 162 | 149 | 159 | 316 | 303 | 95.8861 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | * | 94.8167 | 98.1046 | 91.7420 | 86.3569 | 7712 | 149 | 7710 | 694 | 68 | 9.7983 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0979 | 96.4062 | 99.8501 | 81.6005 | 3997 | 149 | 3997 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | * | 99.5898 | 99.5076 | 99.6722 | 70.9814 | 30109 | 149 | 30105 | 99 | 16 | 16.1616 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4118 | 97.6791 | 97.1460 | 75.4876 | 6271 | 149 | 6263 | 184 | 164 | 89.1304 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4118 | 97.6791 | 97.1460 | 75.4876 | 6271 | 149 | 6263 | 184 | 164 | 89.1304 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5443 | 95.2668 | 99.9334 | 69.5454 | 2999 | 149 | 2999 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.9280 | 69.6538 | 99.4536 | 27.2366 | 342 | 149 | 364 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 98.5556 | 97.4729 | 99.6627 | 53.9495 | 5747 | 149 | 5909 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 98.5556 | 97.4729 | 99.6627 | 53.9495 | 5747 | 149 | 5909 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.6929 | 96.8651 | 88.8653 | 43.0098 | 4604 | 149 | 4597 | 576 | 566 | 98.2639 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1443 | 94.3879 | 97.9673 | 65.1092 | 2506 | 149 | 2458 | 51 | 44 | 86.2745 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.5242 | 79.9191 | 89.6923 | 68.2772 | 593 | 149 | 583 | 67 | 46 | 68.6567 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | het | 94.6747 | 91.3773 | 98.2190 | 47.8412 | 1579 | 149 | 7831 | 142 | 74 | 52.1127 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | het | 98.4524 | 99.0335 | 97.8781 | 70.7160 | 15268 | 149 | 15268 | 331 | 48 | 14.5015 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.4454 | 59.6206 | 99.0826 | 87.0083 | 220 | 149 | 216 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.5292 | 81.0433 | 100.0000 | 70.5882 | 637 | 149 | 640 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | homalt | 37.1308 | 22.7979 | 100.0000 | 98.3841 | 44 | 149 | 44 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 73.7705 | 60.1604 | 95.3390 | 57.0128 | 225 | 149 | 225 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.1364 | 94.5160 | 21.5792 | 83.2603 | 2568 | 149 | 2670 | 9703 | 190 | 1.9582 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 71.1247 | 96.9196 | 56.1741 | 75.2924 | 4688 | 149 | 4854 | 3787 | 159 | 4.1986 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | homalt | 95.4425 | 91.5914 | 99.6317 | 92.4268 | 1623 | 149 | 1623 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.4050 | 90.1585 | 48.8958 | 86.0954 | 1365 | 149 | 1417 | 1481 | 7 | 0.4727 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | het | 72.5780 | 95.3150 | 58.5993 | 70.3918 | 3011 | 148 | 3029 | 2140 | 2055 | 96.0280 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 79.0223 | 86.0771 | 73.0363 | 71.1846 | 915 | 148 | 1590 | 587 | 460 | 78.3646 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6790 | 99.4763 | 99.8825 | 56.1108 | 28112 | 148 | 28064 | 33 | 18 | 54.5455 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.5072 | 95.2564 | 99.8668 | 41.1211 | 2972 | 148 | 3000 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6651 | 96.3610 | 96.9712 | 69.6092 | 3919 | 148 | 3906 | 122 | 111 | 90.9836 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4050 | 96.9403 | 99.9148 | 68.3120 | 4689 | 148 | 4689 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9066 | 93.0451 | 96.8442 | 70.4071 | 1980 | 148 | 1964 | 64 | 54 | 84.3750 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.6381 | 88.5802 | 99.3086 | 86.9266 | 1148 | 148 | 1149 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | het | 83.1436 | 87.7585 | 78.9898 | 84.5440 | 1061 | 148 | 1079 | 287 | 92 | 32.0557 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 21.1214 | 16.8539 | 28.2828 | 55.6054 | 30 | 148 | 28 | 71 | 27 | 38.0282 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3053 | 98.6647 | 99.9543 | 56.5280 | 10936 | 148 | 10933 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | * | 99.6940 | 99.5564 | 99.8319 | 56.9171 | 33215 | 148 | 33263 | 56 | 45 | 80.3571 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.2249 | 97.8914 | 96.5673 | 61.2235 | 6871 | 148 | 7033 | 250 | 97 | 38.8000 | |