PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13851-13900 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0142 | 94.4383 | 97.6435 | 60.1906 | 2581 | 152 | 2569 | 62 | 59 | 95.1613 | |
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | homalt | 35.0427 | 21.2435 | 100.0000 | 98.4405 | 41 | 152 | 41 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7315 | 91.7481 | 97.9155 | 67.3720 | 1690 | 152 | 1691 | 36 | 30 | 83.3333 | |
| ckim-dragen | SNP | ti | HG002complexvar | homalt | 99.9527 | 99.9214 | 99.9840 | 18.3095 | 193311 | 152 | 193417 | 31 | 31 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 69.5898 | 94.9602 | 54.9176 | 73.3767 | 2864 | 152 | 2898 | 2379 | 40 | 1.6814 | |
| ghariani-varprowl | INDEL | D1_5 | HG002compoundhet | het | 36.0201 | 91.2037 | 22.4416 | 71.2332 | 1576 | 152 | 1614 | 5578 | 5463 | 97.9383 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4947 | 99.2475 | 93.8904 | 70.4163 | 20047 | 152 | 20055 | 1305 | 194 | 14.8659 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | het | 79.4200 | 74.1056 | 85.5556 | 95.1768 | 435 | 152 | 462 | 78 | 12 | 15.3846 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | het | 99.3340 | 99.1643 | 99.5043 | 57.7801 | 18037 | 152 | 18065 | 90 | 80 | 88.8889 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | het | 99.0005 | 98.8200 | 99.1816 | 75.9652 | 12729 | 152 | 12725 | 105 | 68 | 64.7619 | |
| astatham-gatk | SNP | ti | HG002complexvar | homalt | 99.9545 | 99.9214 | 99.9876 | 18.3169 | 193311 | 152 | 193301 | 24 | 24 | 100.0000 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | het | 90.4926 | 96.2872 | 85.3557 | 79.1653 | 3942 | 152 | 3707 | 636 | 459 | 72.1698 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.6598 | 95.2648 | 96.0580 | 63.2518 | 3058 | 152 | 3046 | 125 | 116 | 92.8000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1423 | 98.9601 | 97.3379 | 67.2353 | 14465 | 152 | 14077 | 385 | 358 | 92.9870 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.8506 | 94.9010 | 98.8819 | 51.0518 | 2829 | 152 | 2830 | 32 | 27 | 84.3750 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8478 | 91.5179 | 84.4608 | 66.3644 | 1640 | 152 | 1723 | 317 | 119 | 37.5394 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1890 | 91.6575 | 99.0035 | 38.6331 | 1670 | 152 | 1689 | 17 | 16 | 94.1176 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.9933 | 91.3832 | 96.7568 | 85.7571 | 1612 | 152 | 1611 | 54 | 24 | 44.4444 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | * | 98.3031 | 97.0055 | 99.6358 | 87.9552 | 4924 | 152 | 4924 | 18 | 9 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | * | 60.5938 | 47.4048 | 83.9506 | 83.7513 | 137 | 152 | 136 | 26 | 21 | 80.7692 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7368 | 98.6632 | 98.8105 | 55.8582 | 11145 | 151 | 11131 | 134 | 133 | 99.2537 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.9605 | 78.3357 | 97.7193 | 42.0142 | 546 | 151 | 557 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8525 | 95.1101 | 98.6600 | 66.4833 | 2937 | 151 | 2945 | 40 | 2 | 5.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2146 | 96.7797 | 99.6928 | 37.8817 | 4538 | 151 | 4543 | 14 | 2 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.7728 | 88.5693 | 93.0888 | 46.5749 | 1170 | 151 | 3071 | 228 | 79 | 34.6491 | |
| ciseli-custom | SNP | * | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | tv | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 92.5788 | 88.8314 | 96.6563 | 72.4212 | 1201 | 151 | 1243 | 43 | 43 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 74.1346 | 69.5565 | 79.3578 | 92.2309 | 345 | 151 | 346 | 90 | 35 | 38.8889 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | hetalt | 96.1260 | 92.8027 | 99.6962 | 58.0768 | 1947 | 151 | 1969 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m0_e0 | het | 94.8297 | 98.9201 | 91.0641 | 81.0915 | 13832 | 151 | 13829 | 1357 | 128 | 9.4326 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5399 | 97.9550 | 97.1282 | 57.0303 | 7233 | 151 | 7204 | 213 | 194 | 91.0798 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.1029 | 79.6221 | 38.7203 | 60.5927 | 590 | 151 | 587 | 929 | 868 | 93.4338 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | het | 97.2051 | 97.0928 | 97.3176 | 90.2537 | 5043 | 151 | 5043 | 139 | 33 | 23.7410 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | het | 97.2238 | 97.1315 | 97.3163 | 90.3357 | 5113 | 151 | 5113 | 141 | 34 | 24.1135 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | * | 81.5490 | 70.3340 | 97.0190 | 92.0577 | 358 | 151 | 358 | 11 | 3 | 27.2727 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.9596 | 60.5744 | 98.3051 | 90.4992 | 232 | 151 | 232 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3949 | 56.7335 | 100.0000 | 90.7216 | 198 | 151 | 198 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 151 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | segdup | het | 97.8517 | 97.1439 | 98.5698 | 95.5379 | 5136 | 151 | 5100 | 74 | 15 | 20.2703 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | * | 73.9453 | 70.3340 | 77.9476 | 83.7819 | 358 | 151 | 357 | 101 | 93 | 92.0792 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 70.8686 | 77.1903 | 65.5039 | 70.0927 | 511 | 151 | 507 | 267 | 258 | 96.6292 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 151 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | * | 97.9546 | 96.3824 | 99.5789 | 69.3400 | 4023 | 151 | 4020 | 17 | 4 | 23.5294 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | * | 99.2462 | 99.0572 | 99.4359 | 66.9313 | 15865 | 151 | 15864 | 90 | 26 | 28.8889 | |