PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13251-13300 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 87.8398 | 78.3163 | 100.0000 | 38.0563 | 614 | 170 | 682 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | * | 92.2852 | 87.0130 | 98.2375 | 52.4691 | 1139 | 170 | 1059 | 19 | 16 | 84.2105 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 77.9993 | 65.7948 | 95.7627 | 93.1215 | 327 | 170 | 452 | 20 | 9 | 45.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | het | 98.5385 | 97.5525 | 99.5446 | 72.4747 | 6776 | 170 | 6776 | 31 | 13 | 41.9355 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.8128 | 90.0176 | 80.1769 | 69.3559 | 1533 | 170 | 1541 | 381 | 365 | 95.8005 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4410 | 99.0808 | 99.8039 | 64.9625 | 18324 | 170 | 18324 | 36 | 28 | 77.7778 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1082 | 85.6054 | 92.9098 | 41.8941 | 1011 | 170 | 1009 | 77 | 77 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5559 | 94.4948 | 90.6950 | 66.9104 | 2918 | 170 | 3119 | 320 | 136 | 42.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | * | het | 99.7512 | 99.8059 | 99.6966 | 58.6998 | 87404 | 170 | 87413 | 266 | 136 | 51.1278 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.9725 | 65.3768 | 99.7076 | 29.3388 | 321 | 170 | 341 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | * | het | 96.3656 | 93.7454 | 99.1366 | 77.2113 | 2548 | 170 | 2526 | 22 | 11 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6558 | 96.4524 | 98.8896 | 58.1164 | 4622 | 170 | 4631 | 52 | 44 | 84.6154 | |
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | het | 17.3297 | 18.2692 | 16.4820 | 51.6410 | 38 | 170 | 119 | 603 | 564 | 93.5323 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.8827 | 65.3768 | 99.4220 | 27.6151 | 321 | 170 | 344 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | * | segdup | het | 88.2244 | 88.4038 | 88.0457 | 95.3251 | 1296 | 170 | 1311 | 178 | 90 | 50.5618 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.9357 | 97.5922 | 94.3344 | 61.2325 | 6850 | 169 | 6860 | 412 | 18 | 4.3689 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9656 | 98.4786 | 99.4574 | 53.6403 | 10939 | 169 | 15763 | 86 | 67 | 77.9070 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | het | 95.3430 | 91.2887 | 99.7743 | 74.4189 | 1771 | 169 | 1768 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | het | 95.4049 | 91.3995 | 99.7774 | 74.6007 | 1796 | 169 | 1793 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002compoundhet | het | 44.7280 | 80.2570 | 31.0032 | 43.1484 | 687 | 169 | 683 | 1520 | 1507 | 99.1447 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 71.3875 | 89.5226 | 59.3622 | 63.3723 | 1444 | 169 | 1452 | 994 | 947 | 95.2716 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | het | 97.2721 | 98.6880 | 95.8962 | 82.5739 | 12712 | 169 | 12712 | 544 | 123 | 22.6103 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 169 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.0497 | 95.8548 | 96.2454 | 43.3162 | 3908 | 169 | 3922 | 153 | 80 | 52.2876 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 169 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9130 | 78.6885 | 83.2669 | 93.4516 | 624 | 169 | 627 | 126 | 3 | 2.3810 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | * | 85.8371 | 91.9791 | 80.4640 | 88.3383 | 1938 | 169 | 2636 | 640 | 251 | 39.2188 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.3062 | 89.0402 | 89.5738 | 76.8026 | 1373 | 169 | 1366 | 159 | 137 | 86.1635 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1314 | 98.8438 | 97.4291 | 67.5197 | 14448 | 169 | 14060 | 371 | 345 | 92.9919 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | * | 94.1794 | 92.1139 | 96.3397 | 52.0365 | 1974 | 169 | 1974 | 75 | 75 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3777 | 93.7799 | 97.0308 | 84.5325 | 2548 | 169 | 2549 | 78 | 41 | 52.5641 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | * | 98.7184 | 97.8841 | 99.5670 | 88.3214 | 7818 | 169 | 7818 | 34 | 16 | 47.0588 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.9953 | 87.2932 | 84.7354 | 73.4127 | 1161 | 169 | 1249 | 225 | 212 | 94.2222 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 67.0565 | 50.4399 | 100.0000 | 42.0339 | 172 | 169 | 171 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | het | 98.9149 | 99.1251 | 98.7057 | 78.5477 | 19147 | 169 | 19141 | 251 | 23 | 9.1634 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2004 | 94.5833 | 99.9665 | 44.9492 | 2951 | 169 | 2980 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_siren | het | 99.6130 | 99.4093 | 99.8175 | 56.2607 | 28440 | 169 | 28435 | 52 | 14 | 26.9231 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | hetalt | 97.5479 | 95.4312 | 99.7606 | 69.1784 | 3530 | 169 | 3750 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9963 | 86.9094 | 100.0000 | 30.8479 | 1122 | 169 | 1150 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | HG002complexvar | * | 99.9492 | 99.9313 | 99.9671 | 22.0213 | 245983 | 169 | 245892 | 81 | 31 | 38.2716 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4411 | 99.0590 | 99.8261 | 62.5525 | 17791 | 169 | 17791 | 31 | 26 | 83.8710 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | homalt | 99.4381 | 99.0770 | 99.8019 | 64.9829 | 18140 | 169 | 18140 | 36 | 28 | 77.7778 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | * | 97.3272 | 95.5005 | 99.2250 | 80.3823 | 3587 | 169 | 3585 | 28 | 7 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6222 | 99.3336 | 99.9125 | 51.6616 | 25190 | 169 | 25113 | 22 | 14 | 63.6364 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.2466 | 79.7847 | 96.2482 | 67.1252 | 667 | 169 | 667 | 26 | 23 | 88.4615 | |
| rpoplin-dv42 | SNP | tv | map_siren | het | 99.4388 | 99.4093 | 99.4683 | 57.2644 | 28440 | 169 | 28436 | 152 | 65 | 42.7632 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | het | 98.4890 | 98.6958 | 98.2832 | 77.8632 | 12713 | 168 | 12709 | 222 | 3 | 1.3514 | |