PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12201-12250 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3204 | 98.9679 | 99.6754 | 59.9358 | 19657 | 205 | 19650 | 64 | 45 | 70.3125 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.1579 | 94.9718 | 95.3448 | 39.6821 | 3872 | 205 | 3871 | 189 | 179 | 94.7090 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | * | 99.4981 | 99.1892 | 99.8090 | 65.1604 | 25078 | 205 | 25078 | 48 | 19 | 39.5833 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2234 | 91.3356 | 99.4570 | 29.5056 | 2161 | 205 | 2198 | 12 | 11 | 91.6667 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | * | 97.8015 | 95.9614 | 99.7136 | 84.0906 | 4871 | 205 | 4874 | 14 | 8 | 57.1429 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 205 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 205 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 205 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 205 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.7041 | 0.0000 | 0.0000 | 4567 | 205 | 0 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | * | 98.9223 | 98.9600 | 98.8846 | 73.7335 | 19507 | 205 | 19503 | 220 | 8 | 3.6364 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0738 | 98.6992 | 95.5010 | 61.0266 | 15555 | 205 | 15517 | 731 | 705 | 96.4432 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3783 | 86.4597 | 99.1667 | 88.2132 | 1309 | 205 | 1309 | 11 | 8 | 72.7273 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002complexvar | hetalt | 28.7793 | 17.0040 | 93.5897 | 61.3861 | 42 | 205 | 219 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | * | 96.2346 | 94.2833 | 98.2684 | 83.2956 | 3381 | 205 | 3405 | 60 | 20 | 33.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.6233 | 84.1577 | 98.1651 | 57.4219 | 1089 | 205 | 107 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 65.7233 | 50.4831 | 94.1441 | 78.8168 | 209 | 205 | 209 | 13 | 8 | 61.5385 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 90.6327 | 87.6737 | 93.7984 | 45.3197 | 1451 | 204 | 1452 | 96 | 90 | 93.7500 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | homalt | 98.7927 | 97.7441 | 99.8639 | 61.4588 | 8839 | 204 | 8807 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | SNP | ti | map_siren | * | 99.4355 | 99.7967 | 99.0768 | 57.9702 | 100151 | 204 | 97874 | 912 | 55 | 6.0307 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.9688 | 92.2844 | 99.9596 | 33.6636 | 2440 | 204 | 2476 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | homalt | 99.3934 | 98.8858 | 99.9062 | 60.1223 | 18105 | 204 | 18105 | 17 | 15 | 88.2353 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.4568 | 90.6336 | 94.3548 | 75.3152 | 1974 | 204 | 1755 | 105 | 95 | 90.4762 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0126 | 98.9729 | 99.0524 | 59.2954 | 19658 | 204 | 19651 | 188 | 96 | 51.0638 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2219 | 99.3862 | 99.0582 | 74.4553 | 33032 | 204 | 33027 | 314 | 203 | 64.6497 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | het | 91.0577 | 91.3376 | 90.7795 | 57.5294 | 2151 | 204 | 2166 | 220 | 217 | 98.6364 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| qzeng-custom | SNP | ti | segdup | * | 98.7450 | 98.9558 | 98.5351 | 91.7233 | 19333 | 204 | 19237 | 286 | 45 | 15.7343 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2324 | 94.6386 | 99.9724 | 29.4827 | 3601 | 204 | 3625 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | * | hetalt | 94.3306 | 90.2765 | 98.7661 | 58.9229 | 1894 | 204 | 1921 | 24 | 24 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.3857 | 90.2532 | 98.9147 | 46.6501 | 1889 | 204 | 1914 | 21 | 21 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 17.4089 | 0.0000 | 0.0000 | 43 | 204 | 0 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | * | 99.4951 | 99.1851 | 99.8071 | 65.1309 | 24829 | 204 | 24829 | 48 | 19 | 39.5833 | |
| ckim-isaac | SNP | * | func_cds | * | 99.4183 | 98.8760 | 99.9666 | 20.1352 | 17946 | 204 | 17946 | 6 | 2 | 33.3333 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.7292 | 74.3073 | 93.3042 | 85.8380 | 590 | 204 | 641 | 46 | 8 | 17.3913 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e0 | * | 99.3734 | 99.3258 | 99.4210 | 73.9134 | 30054 | 204 | 30050 | 175 | 42 | 24.0000 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e1 | * | 99.3781 | 99.3327 | 99.4236 | 73.9461 | 30365 | 204 | 30361 | 176 | 42 | 23.8636 | |
| dgrover-gatk | INDEL | * | HG002complexvar | het | 99.6862 | 99.5586 | 99.8141 | 57.9282 | 46008 | 204 | 45634 | 85 | 51 | 60.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9622 | 97.8431 | 98.0816 | 45.4687 | 9254 | 204 | 9254 | 181 | 176 | 97.2376 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.4407 | 85.5319 | 81.4493 | 59.0504 | 1206 | 204 | 1124 | 256 | 208 | 81.2500 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | homalt | 80.2314 | 67.0968 | 99.7602 | 75.3982 | 416 | 204 | 416 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | * | homalt | 99.9888 | 99.9827 | 99.9949 | 17.0955 | 1179957 | 204 | 1179943 | 60 | 53 | 88.3333 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | homalt | 95.8935 | 92.6114 | 99.4168 | 85.4187 | 2557 | 204 | 2557 | 15 | 7 | 46.6667 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.1402 | 99.2630 | 80.8911 | 72.6164 | 27474 | 204 | 27579 | 6515 | 214 | 3.2847 | |
| gduggal-snapplat | INDEL | * | map_siren | hetalt | 28.1292 | 17.4089 | 73.2143 | 97.8495 | 43 | 204 | 41 | 15 | 8 | 53.3333 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3175 | 87.0886 | 87.5476 | 72.9553 | 1376 | 204 | 1378 | 196 | 10 | 5.1020 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | homalt | 86.4721 | 76.1682 | 100.0000 | 89.7193 | 652 | 204 | 652 | 0 | 0 | ||