PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
11651-11700 / 86044 show all
raldana-dualsentieonINDELI16_PLUS*hetalt
94.2306
89.1325
99.9472
55.4588
1870228189211
100.0000
raldana-dualsentieonINDELI16_PLUSHG002compoundhethetalt
94.2662
89.1543
100.0000
44.8215
1866227188600
jpowers-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.5638
41.4948
68.0851
72.2550
1612271607574
98.6667
jli-customSNPtimap_l150_m2_e0*
99.2101
98.8933
99.5289
73.1343
20285227202839636
37.5000
jli-customSNPtimap_l150_m2_e1*
99.2158
98.9046
99.5289
73.2251
20496227204949736
37.1134
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
2.5751
0.0000
0.0000
6227000
gduggal-snapfbSNPtvmap_l125_m1_e0homalt
97.7782
96.1263
99.4878
77.1149
56332275633297
24.1379
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
75.6857
66.9578
87.0301
80.4555
4602274636964
92.7536
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.2050
96.8677
97.5447
33.7225
70202277032177164
92.6554
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
93.8372
90.5887
97.3274
60.9904
218522721856044
73.3333
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.1129
91.7634
94.5026
50.6095
25292272527147143
97.2789
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
12.8639
7.7236
38.4615
59.1928
1922735566
10.7143
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0766
94.3658
99.9478
25.1564
3802227382722
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1731
97.9516
98.3956
52.7295
1085522710855177173
97.7401
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.7110
86.7096
99.6050
29.5781
1481227151366
100.0000
ckim-dragenSNPtimap_l150_m2_e0*
98.2329
98.8933
97.5811
78.1929
202852272029250367
13.3201
ciseli-customSNPtisegdup*
97.2840
98.8381
95.7779
90.5362
1931022719237848118
13.9151
ciseli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
81.1779
95.3254
70.6870
69.0825
462922746711937164
8.4667
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6181
93.5621
99.8804
39.4313
3299227334044
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6181
93.5621
99.8804
39.4313
3299227334044
100.0000
ckim-isaacINDEL*map_l150_m2_e0homalt
68.8347
52.8067
98.8327
85.5211
25422725431
33.3333
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
91.0595
83.5864
100.0000
65.1965
1156227116000
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
60.3108
43.3915
98.8571
88.9937
17422717320
0.0000
gduggal-bwafbINDEL*map_sirenhet
96.6142
94.9645
98.3223
79.9104
428122744547620
26.3158
jlack-gatkSNP*map_l100_m0_e0het
93.8309
98.9295
89.2321
81.9092
20978227209742531189
7.4674
hfeng-pmm3INDELD6_15HG002complexvarhet
95.8678
92.7244
99.2318
57.2218
289322728422217
77.2727
ckim-isaacINDELD1_5map_l125_m2_e1het
82.2394
70.6494
98.3784
89.0597
54422654693
33.3333
egarrison-hhgaSNP*map_l125_m0_e0het
98.9341
98.2154
99.6635
75.5931
12438226124384217
40.4762
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.1492
94.2273
98.1512
80.5335
368922636106832
47.0588
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.8288
98.4539
97.2116
67.2453
1439122614015402380
94.5274
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
67.5753
0.0000
0.0000
471226000
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.8193
92.4187
97.3479
49.5090
275522627537552
69.3333
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.3020
94.5490
92.0875
85.9655
3920226382932986
26.1398
bgallagher-sentieonSNP*map_l100_m2_e0het
99.2145
99.5129
98.9179
70.0977
461732264616250563
12.4752
bgallagher-sentieonSNP*map_l100_m2_e1het
99.2207
99.5181
98.9251
70.1134
466722264666150763
12.4260
bgallagher-sentieonSNPtimap_sirenhet
99.4766
99.6377
99.3160
56.6817
621562266214742850
11.6822
asubramanian-gatkINDEL*map_l125_m1_e0het
88.1603
83.0712
93.9138
91.7400
11092261111727
9.7222
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9233
98.8811
98.9655
57.0313
19973226199942095
2.3923
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
86.7681
0.0000
0.0000
1482226000
ckim-dragenSNPtimap_l100_m1_e0het
98.1230
99.2485
97.0227
71.3768
297172252972091287
9.5395
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.1008
91.8360
94.4009
50.5628
25312252529150146
97.3333
cchapple-customSNP*map_l250_m2_e1het
95.2117
95.7257
94.7032
91.6862
5039225504228265
23.0496
ciseli-customINDEL*map_l150_m2_e1homalt
63.5484
54.2683
76.6571
91.7065
2672252668159
72.8395
ckim-isaacINDEL*HG002compoundhethomalt
60.3591
67.2012
54.7816
76.0328
461225464383372
97.1279
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3148
95.2850
99.4329
24.6012
454722545592626
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
84.0543
76.5381
93.2075
68.0466
7342257415446
85.1852
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.9533
94.0867
100.0000
30.1357
3580225360500
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
85.1335
74.1972
99.8510
26.9063
64722567011
100.0000