PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
11301-11350 / 86044 show all
ghariani-varprowlSNP*map_l150_m1_e0het
96.8491
98.7368
95.0321
81.8341
1907224419072997197
19.7593
gduggal-snapplatINDEL*map_l125_m0_e0*
79.7334
72.3356
88.8166
94.7534
6382446838613
15.1163
ckim-isaacINDELI1_5map_l125_m1_e0*
82.3612
70.6024
98.8196
86.4457
58624458672
28.5714
rpoplin-dv42SNP*map_l100_m0_e0het
98.8725
98.8493
98.8958
68.4376
2096124420957234116
49.5726
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
84.3679
93.1480
77.1005
68.0245
331724433771003177
17.6471
ltrigg-rtg2SNPtiHG002complexvarhomalt
99.9240
99.8739
99.9741
18.1301
1932192441931175049
98.0000
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1911
97.7409
98.6454
80.0759
105572441055914573
50.3448
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1301
98.6331
99.6322
53.5853
17607244176066530
46.1538
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.9317
95.4084
98.5046
64.3470
507024450727769
89.6104
jpowers-varprowlSNP*map_l125_m1_e0homalt
99.1107
98.5566
99.6710
69.6349
16661244166615540
72.7273
jli-customSNPtimap_l100_m0_e0*
99.2096
98.8792
99.5422
63.1044
21527244215279935
35.3535
ltrigg-rtg1SNPtimap_l150_m0_e0het
97.4302
95.2129
99.7533
66.6849
48532444853123
25.0000
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
62.0432
53.7002
73.4554
68.7187
283244321116109
93.9655
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
71.2738
92.2490
58.0701
68.6719
29042443015217768
3.1236
gduggal-bwavardINDELI16_PLUS*het
66.4433
91.0228
52.3161
67.5288
2474244249622751694
74.4615
gduggal-bwaplatINDEL*map_l150_m1_e0homalt
64.3172
47.4026
100.0000
93.7819
21924321900
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
88.0789
89.7382
86.4799
86.3258
21252432130333219
65.7658
qzeng-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
77.6395
70.9330
85.7466
65.4687
59324375812694
74.6032
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.1246
82.0664
84.2105
65.4096
1112243896168107
63.6905
egarrison-hhgaINDELD6_15*het
92.3399
97.9037
87.3745
56.6927
113492431192417231642
95.2989
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9212
94.7708
99.1715
26.5340
440424344293735
94.5946
dgrover-gatkSNPtimap_sirenhet
99.5897
99.6105
99.5689
58.1271
621392436213026951
18.9591
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
95.1518
97.8124
92.6322
56.2191
1086524311001875754
86.1714
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5615
93.9687
99.3014
25.3607
378624342643029
96.6667
astatham-gatkSNP*HG002complexvarhomalt
99.9516
99.9158
99.9875
19.8527
2883312432883063634
94.4444
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
62.5395
49.1632
85.9155
86.2802
235243244407
17.5000
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.2661
86.8078
96.2071
67.4824
159924315986354
85.7143
ciseli-customINDELD1_5map_l150_m2_e1*
74.1635
68.7661
80.4805
92.8937
53524353613062
47.6923
jpowers-varprowlSNPtimap_l250_m1_e0*
95.2339
94.6932
95.7809
91.0914
4336243433619157
29.8429
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5400
99.2100
99.8721
70.2148
30518243304613932
82.0513
gduggal-snapvardSNPtimap_l250_m2_e1*
86.9758
95.2325
80.0366
91.7380
48342424807119973
6.0884
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50*
90.8942
97.5031
85.1244
74.2945
945024295451668246
14.7482
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
77.1166
84.3061
71.0570
69.6058
13002422131868620
71.4286
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
dgrover-gatkSNP*map_l100_m1_e0het
99.3755
99.4665
99.2846
70.4056
451172424510632562
19.0769
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
gduggal-bwafbSNPtimap_l125_m2_e0het
98.5978
98.7179
98.4780
75.9201
186342421863428878
27.0833
gduggal-bwafbSNPtimap_l125_m2_e1het
98.6133
98.7321
98.4947
75.9784
188452421884528878
27.0833
gduggal-bwavardINDELD16_PLUSHG002complexvarhetalt
0.0000
2.0243
0.0000
0.0000
5242000
gduggal-bwavardSNPtvmap_l100_m0_e0*
93.8772
97.8167
90.2427
78.7360
1084224210821117050
4.2735
ndellapenna-hhgaSNPtvHG002compoundhet*
98.0516
97.2879
98.8274
47.0684
8681242868110393
90.2913
qzeng-customINDEL*map_l150_m1_e0het
80.8118
71.6959
92.5834
95.0292
6132427496029
48.3333
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.4582
91.2192
93.7313
49.9720
25142422512168168
100.0000
jlack-gatkSNP*map_l125_m1_e0homalt
99.2141
98.5685
99.8681
64.3628
16663242166632216
72.7273
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3984
94.9288
100.0000
24.8387
4530242454200
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9982
90.5081
99.9572
32.8251
2298241233411
100.0000
gduggal-bwavardSNPtilowcmp_SimpleRepeat_diTR_11to50*
94.8869
95.0176
94.7566
72.8903
45962414554252104
41.2698
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
94.2517
90.5267
98.2964
70.3273
23032412308407
17.5000
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
23.7730
13.6201
93.3884
56.4748
3824111388
100.0000