PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
11101-11150 / 86044 show all
ghariani-varprowlSNPtvmap_l100_m2_e0*
97.8210
98.9893
96.6799
73.9056
2478025324781851137
16.0987
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_11to50het
88.9438
97.7871
81.5673
65.0094
1118025311085250589
3.5529
gduggal-snapplatINDELI6_15map_siren*
27.1540
17.0492
66.6667
90.7063
5225350252
8.0000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_11to50*
90.2938
94.7900
86.2049
78.5292
4603253456873164
8.7551
gduggal-snapvardSNPtvmap_l125_m1_e0het
90.5242
97.5015
84.4788
81.5577
987325398461809112
6.1913
ghariani-varprowlINDELD6_15*het
73.5164
97.8175
58.8869
57.8444
113392531136479347830
98.6892
ghariani-varprowlSNP*map_l125_m2_e1homalt
99.1110
98.5626
99.6655
70.0625
17280252172805839
67.2414
gduggal-snapplatINDELI1_5map_sirenhomalt
85.7005
79.2079
93.3526
86.1508
960252969696
8.6957
ckim-isaacINDELI16_PLUSHG002complexvarhetalt
38.7208
24.7761
88.5714
62.2302
83252931210
83.3333
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4687
96.5227
96.4148
36.9062
69952526992260103
39.6154
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
jpowers-varprowlSNPtimap_l250_m2_e1*
95.5153
95.0355
96.0000
91.5044
4824252482420159
29.3532
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
74.0703
72.3684
75.8542
64.2217
660252666212139
65.5660
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.5522
94.7192
98.4575
25.9492
452025245327169
97.1831
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2696
97.9874
96.5623
64.0273
1226925213595484266
54.9587
mlin-fermikitINDELI6_15*homalt
94.2236
95.9609
92.5481
47.3706
59872526011484481
99.3802
ltrigg-rtg2SNPtimap_l250_m2_e1*
97.3857
95.0355
99.8552
81.2214
4824252482774
57.1429
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3352
97.2892
99.4041
71.1873
904425291745555
100.0000
eyeh-varpipeSNP*HG002complexvarhomalt
99.9303
99.9127
99.9480
18.2871
288323252263218137103
75.1825
gduggal-bwaplatINDEL*map_l150_m2_e1homalt
65.5738
48.7805
100.0000
94.1449
24025224000
gduggal-bwaplatINDELI1_5map_l150_m2_e1*
68.8039
52.5424
99.6429
96.3688
27925227910
0.0000
raldana-dualsentieonSNP*map_l100_m0_e0het
98.7044
98.8116
98.5974
70.4890
20953252209492983
1.0067
raldana-dualsentieonSNP*map_l150_m1_e0het
98.5115
98.6954
98.3283
76.6149
19064252190583243
0.9259
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
83.1099
71.1009
100.0000
26.0069
62025264300
raldana-dualsentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.7931
91.9551
99.9655
41.6230
2869251289811
100.0000
dgrover-gatkSNPtimap_l100_m1_e0*
99.5344
99.4763
99.5926
66.0277
476802514767319549
25.1282
hfeng-pmm1SNP*map_l150_m2_e1het
99.1153
98.7674
99.4657
76.0302
201122512010610827
25.0000
gduggal-snapplatINDEL*HG002compoundhethomalt
27.3298
63.4111
17.4185
67.5742
43525166831672730
86.2015
ghariani-varprowlSNP*map_l125_m2_e0homalt
99.1058
98.5554
99.6624
70.0500
17124251171245839
67.2414
ghariani-varprowlSNPtvmap_l100_m1_e0*
97.8612
98.9756
96.7717
72.1277
2425025124251809135
16.6873
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5176
97.3637
99.6992
42.0335
927025192822826
92.8571
ckim-dragenINDEL*HG002complexvarhet
99.6184
99.4569
99.7805
57.4574
459612514545810050
50.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.3139
89.5894
97.3615
44.5095
216025122146045
75.0000
qzeng-customINDEL*HG002compoundhethet
90.0667
93.8691
86.5604
55.7571
38432513009146722782
59.5462
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.9022
99.1118
98.6934
54.7879
280092515113767794
13.8848
qzeng-customINDEL*map_l150_m2_e0het
81.2179
72.2958
92.6521
95.0610
6552518076430
46.8750
ndellapenna-hhgaSNPtvmap_l100_m1_e0het
99.0304
98.3784
99.6911
62.9947
15167250151674717
36.1702
ndellapenna-hhgaSNPtvmap_l100_m2_e0het
99.0369
98.4154
99.6662
64.6823
15527250155275217
32.6923
qzeng-customINDEL*map_l100_m0_e0het
81.4136
75.5142
88.3128
92.9110
771250100513330
22.5564
mlin-fermikitINDELI1_5HG002compoundhethet
38.7440
70.5882
26.6993
68.3093
60025054614991487
99.1995
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.0492
94.1010
98.0798
79.0164
398825039847811
14.1026
ndellapenna-hhgaINDELD1_5HG002compoundhethet
53.2922
85.5324
38.7035
48.7795
1478250200631773125
98.3632
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.0557
88.2519
98.4127
61.7176
187825018603025
83.3333
ltrigg-rtg2SNPtimap_l250_m2_e0*
97.3703
95.0080
99.8532
81.1041
4758250476174
57.1429
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
87.3444
86.0491
88.6792
69.8967
15422501551198185
93.4343
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
65.6565
49.0835
99.1266
31.0241
24125022721
50.0000
astatham-gatkSNPtisegduphet
98.8338
97.9219
99.7628
90.8470
1178025011778282
7.1429
raldana-dualsentieonSNPtimap_l125_m2_e0*
99.1246
99.1738
99.0754
71.0207
300082503000428011
3.9286
raldana-dualsentieonSNPtimap_l125_m2_e1*
99.1254
99.1822
99.0686
71.0811
303192503031528511
3.8597