PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
10951-11000 / 86044 show all
ckim-isaacINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
67.3433
50.9434
99.3151
42.0635
27026029021
50.0000
egarrison-hhgaSNP*map_l125_m0_e0*
99.2012
98.6588
99.7496
73.5088
19125260191254823
47.9167
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.5576
95.6170
99.5787
50.2750
567226056722422
91.6667
ckim-dragenSNP*map_l150_m2_e0het
97.5195
98.7086
96.3588
81.7586
198732601987475169
9.1878
ciseli-customINDELI1_5map_l150_m1_e0*
55.6515
48.6166
65.0667
91.6126
246260244131111
84.7328
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.6821
90.4306
99.3530
87.4575
245726024571611
68.7500
raldana-dualsentieonSNPtimap_l100_m1_e0het
99.0505
99.1317
98.9695
65.9806
29682260296753096
1.9418
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9932
98.5200
99.4710
64.4487
17308260172999210
10.8696
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
89.5661
87.7820
91.4243
69.1078
18682601855174164
94.2529
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2054
98.6910
99.7252
56.8874
19602260195985435
64.8148
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.8790
77.9848
93.1104
42.5160
9212609196868
100.0000
anovak-vgSNPtvmap_l250_m1_e0homalt
81.8115
69.6262
99.1667
88.3586
59626059553
60.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
33.7398
28.1768
42.0398
49.5609
102260169233185
79.3991
bgallagher-sentieonSNP**homalt
99.9858
99.9781
99.9936
17.1960
117990225911798787666
86.8421
rpoplin-dv42SNPtimap_l100_m1_e0het
99.3390
99.1350
99.5438
63.8948
296832592967513682
60.2941
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_diTR_11to50het
97.7912
95.8467
99.8163
67.9237
59772595977119
81.8182
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
53.4223
89.0717
38.1524
44.9605
2111259209834013202
94.1488
ciseli-customINDELI1_5map_l100_m0_e0*
58.4054
52.3020
66.1215
87.8959
284259283145118
81.3793
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3592
95.2372
99.5780
26.4946
517925951912222
100.0000
ckim-dragenSNP*map_l150_m1_e0het
97.4659
98.6591
96.3012
80.3004
190572591905873268
9.2896
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9719
99.1684
98.7761
70.4653
308842593107338549
12.7273
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9719
99.1684
98.7761
70.4653
308842593107338549
12.7273
ckim-dragenSNPtimap_l125_m1_e0*
98.4145
99.1171
97.7219
72.4285
290762592908367879
11.6519
ckim-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9827
89.0533
99.4898
29.9773
210725921451111
100.0000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0259000
gduggal-snapplatSNP*segduphet
98.6817
98.5044
98.8598
94.8279
170582591708019717
8.6294
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0259000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
43.4297
28.6501
89.7059
44.7154
1042596177
100.0000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.9151
90.2558
95.7358
51.6673
23992592920913011194
91.7756
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
ckim-vqsrINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9827
89.0533
99.4898
29.9773
210725921451111
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9856
97.6629
98.3105
52.2428
1082325910823186181
97.3118
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.7098
95.5696
97.8776
67.1394
55872595534120110
91.6667
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.7098
95.5696
97.8776
67.1394
55872595534120110
91.6667
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
64.0121
47.2505
99.2032
31.2329
23225924921
50.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8464
98.6772
97.0296
69.0281
193202591950159725
4.1876
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8464
98.6772
97.0296
69.0281
193202591950159725
4.1876
ltrigg-rtg2SNPtvmap_l150_m1_e0het
97.9852
96.2712
99.7612
57.9109
66872596685161
6.2500
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1160
95.4815
98.8074
51.9618
547325954686642
63.6364
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3994
95.4409
95.3578
49.7393
54222595423264128
48.4848
gduggal-bwavardINDEL*segdup*
89.7413
89.8670
89.6160
95.3552
22972592287265217
81.8868
gduggal-bwavardINDEL*map_l100_m2_e0*
90.5115
93.0138
88.1404
88.0002
34352583441463191
41.2527
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
49.9696
38.2775
71.9457
61.2960
1602581596256
90.3226
eyeh-varpipeSNPtv*het
98.0748
99.9564
96.2628
25.2886
59144625858337122648112
0.4945
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.1064
96.3243
99.9558
58.4821
6761258678631
33.3333
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
72.8440
62.9842
86.3636
38.2927
4392584376965
94.2029
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.1664
67.4653
98.7589
27.5995
53525855776
85.7143
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.5265
61.2613
85.9244
78.5005
4082584096727
40.2985
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.5265
61.2613
85.9244
78.5005
4082584096727
40.2985