PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
10901-10950 / 86044 show all
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.6677
96.0493
95.2892
79.6573
63942636392316202
63.9241
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.1695
90.0530
98.6804
37.0620
238126323933228
87.5000
ndellapenna-hhgaSNPtimap_l125_m0_e0*
98.8454
97.9392
99.7685
71.9216
12499263124992916
55.1724
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.5865
98.1950
77.4326
84.5229
14308263143804191196
4.6767
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.5865
98.1950
77.4326
84.5229
14308263143804191196
4.6767
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2212
85.5653
100.0000
31.5699
1559263159100
dgrover-gatkSNPtiHG002complexvarhet
99.9452
99.9164
99.9739
17.0118
3145032633144498232
39.0244
dgrover-gatkSNPtv*het
99.8830
99.9556
99.8105
23.6829
591433263591362112357
5.0757
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
14.8482
8.0420
96.6292
50.2793
232638633
100.0000
gduggal-bwafbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2991
99.0593
97.5505
61.1472
2769626327758697164
23.5294
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.6216
88.8936
84.4628
86.9345
21052632044376124
32.9787
jli-customSNPtimap_l100_m2_e0het
99.3179
99.1411
99.4953
64.3096
303592633035715438
24.6753
jli-customSNPtimap_l100_m2_e1het
99.3237
99.1505
99.4976
64.3340
306972633069515538
24.5161
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0957
93.3062
96.9553
51.5459
36662633662115107
93.0435
jli-customINDELI6_15*het
98.3728
97.3787
99.3875
54.1020
977026397366034
56.6667
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.8581
97.1203
80.2087
86.4645
88702638916220030
1.3636
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.8581
97.1203
80.2087
86.4645
88702638916220030
1.3636
jmaeng-gatkINDELD1_5*het
99.4941
99.6997
99.2893
60.9724
8731126387316625129
20.6400
ltrigg-rtg1INDELD1_5HG002complexvarhet
99.1733
98.7383
99.6122
51.3027
20503262202947931
39.2405
jli-customSNPtimap_l100_m1_e0het
99.3190
99.1250
99.5138
62.5391
296802622967814538
26.2069
ltrigg-rtg1SNPtimap_l150_m0_e0*
98.1783
96.6671
99.7375
70.0220
759926275982011
55.0000
gduggal-snapfbSNPtimap_l150_m0_e0het
94.2863
94.8597
93.7197
77.7514
48352624835324174
53.7037
gduggal-snapvardSNPtvmap_l125_m0_e0*
89.3998
96.0489
83.6117
82.4411
63692626357124662
4.9759
gduggal-snapvardSNPtvmap_l125_m2_e0het
90.6936
97.4909
84.7824
82.7072
10180262101511822114
6.2569
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
90.3941
93.8999
87.1407
79.9532
4033262403259511
1.8487
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
47.4248
37.3206
65.0316
30.6257
156262411221186
84.1629
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1947
98.5087
99.8903
63.5767
1730626217297195
26.3158
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.6924
96.0989
95.2894
42.1888
64542626453319300
94.0439
mlin-fermikitINDELI16_PLUS*het
86.1646
90.3606
82.3411
68.6094
24562622448525508
96.7619
mlin-fermikitINDELI1_5map_sirenhomalt
84.8214
78.3828
92.4125
74.4596
9502629507875
96.1538
mlin-fermikitSNPtimap_l250_m0_e0homalt
50.6550
39.9083
69.3227
79.0659
1742621747771
92.2078
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
60.2985
43.5345
98.0583
86.3666
20226220242
50.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.4344
93.1143
100.0000
27.8227
3543262356700
rpoplin-dv42SNPtimap_l100_m2_e0het
99.3487
99.1444
99.5539
65.6465
303602623035213682
60.2941
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.7274
84.7190
100.0000
29.6719
1447261147900
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
ghariani-varprowlSNP*map_l100_m0_e0het
97.0530
98.7692
95.3955
77.5266
20944261209461011206
20.3759
gduggal-snapplatINDEL*map_l100_m0_e0het
80.0362
74.4368
86.5466
93.5607
76026181712718
14.1732
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6279
93.5220
99.9473
22.3450
3768261379322
100.0000
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
45.1028
77.9188
31.7367
57.3110
92126192119811814
91.5699
ciseli-customSNPtvmap_l150_m0_e0homalt
82.2034
80.3464
84.1483
77.4538
10672611067201160
79.6020
anovak-vgSNP*HG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
anovak-vgSNPtvHG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.8427
93.9232
97.8424
72.3914
40342614036896
6.7416
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
51.1783
36.9565
83.1933
65.7061
153261992020
100.0000
mlin-fermikitINDELI1_5map_l125_m2_e0het
63.7838
47.4849
97.1193
82.2238
23626123674
57.1429
ltrigg-rtg2SNPtvmap_l150_m2_e0het
98.0436
96.4010
99.7431
60.6061
69912616989181
5.5556
ltrigg-rtg2SNPtvmap_l150_m2_e1het
98.0696
96.4480
99.7466
60.6896
70872617085181
5.5556
dgrover-gatkSNP*map_l150_m1_e0*
99.1521
99.1473
99.1569
77.1188
303482613034225859
22.8682